Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Ushbp1Q8R370 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Ushbp1Q8R370 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.39■■□□□ 1.98
Ushbp1Q8R370 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.97
Ushbp1Q8R370 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Ushbp1Q8R370 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
Ushbp1Q8R370 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC27.37■■□□□ 1.97
Ushbp1Q8R370 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Ushbp1Q8R370 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Ushbp1Q8R370 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ushbp1Q8R370 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Ushbp1Q8R370 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27.33■■□□□ 1.96
Ushbp1Q8R370 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.32■■□□□ 1.96
Ushbp1Q8R370 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Ushbp1Q8R370 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Ushbp1Q8R370 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC27.31■■□□□ 1.96
Ushbp1Q8R370 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
Ushbp1Q8R370 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
Ushbp1Q8R370 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC27.3■■□□□ 1.96
Ushbp1Q8R370 Gm8503-201ENSMUST00000118131 455 ntBASIC27.29■■□□□ 1.96
Ushbp1Q8R370 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Ushbp1Q8R370 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Ushbp1Q8R370 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC27.28■■□□□ 1.96
Ushbp1Q8R370 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Ushbp1Q8R370 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Ushbp1Q8R370 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC27.27■■□□□ 1.96
Ushbp1Q8R370 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Ushbp1Q8R370 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ushbp1Q8R370 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Ushbp1Q8R370 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Ushbp1Q8R370 Gm6821-201ENSMUST00000107540 542 ntBASIC27.25■■□□□ 1.95
Ushbp1Q8R370 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Ushbp1Q8R370 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Ushbp1Q8R370 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ushbp1Q8R370 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ushbp1Q8R370 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ushbp1Q8R370 Fezf2-202ENSMUST00000224023 1917 ntBASIC27.21■■□□□ 1.95
Ushbp1Q8R370 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Ushbp1Q8R370 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ushbp1Q8R370 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ushbp1Q8R370 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ushbp1Q8R370 Gm43863-201ENSMUST00000203822 1192 ntBASIC27.19■■□□□ 1.94
Ushbp1Q8R370 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Ushbp1Q8R370 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC27.17■■□□□ 1.94
Ushbp1Q8R370 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Ushbp1Q8R370 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Ushbp1Q8R370 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Ushbp1Q8R370 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ushbp1Q8R370 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ushbp1Q8R370 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Ushbp1Q8R370 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.15■■□□□ 1.94
Ushbp1Q8R370 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
Ushbp1Q8R370 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Ushbp1Q8R370 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC27.14■■□□□ 1.94
Ushbp1Q8R370 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Ushbp1Q8R370 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Ushbp1Q8R370 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Ushbp1Q8R370 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Ushbp1Q8R370 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ushbp1Q8R370 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ushbp1Q8R370 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Ushbp1Q8R370 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ushbp1Q8R370 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Ushbp1Q8R370 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Ushbp1Q8R370 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Ushbp1Q8R370 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Ushbp1Q8R370 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Ushbp1Q8R370 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Ushbp1Q8R370 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Ushbp1Q8R370 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Ushbp1Q8R370 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Ushbp1Q8R370 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC27.05■■□□□ 1.92
Ushbp1Q8R370 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ushbp1Q8R370 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
Ushbp1Q8R370 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ushbp1Q8R370 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Ushbp1Q8R370 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Ushbp1Q8R370 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC27.03■■□□□ 1.92
Ushbp1Q8R370 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Ushbp1Q8R370 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Ushbp1Q8R370 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
Ushbp1Q8R370 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC27■■□□□ 1.91
Ushbp1Q8R370 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC27■■□□□ 1.91
Ushbp1Q8R370 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Ushbp1Q8R370 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Ushbp1Q8R370 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Ushbp1Q8R370 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Ushbp1Q8R370 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.96■■□□□ 1.91
Ushbp1Q8R370 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ushbp1Q8R370 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ushbp1Q8R370 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
Ushbp1Q8R370 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.94■■□□□ 1.9
Ushbp1Q8R370 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ushbp1Q8R370 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ushbp1Q8R370 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Ushbp1Q8R370 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC26.93■■□□□ 1.9
Ushbp1Q8R370 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ushbp1Q8R370 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.92■■□□□ 1.9
Ushbp1Q8R370 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.92■■□□□ 1.9
Ushbp1Q8R370 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Retrieved 100 of 76,532 protein–RNA pairs in 88.1 ms