Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pif1Q80SX8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Gm11599-201ENSMUST00000118720 878 ntBASIC22.5■■□□□ 1.19
Pif1Q80SX8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Pif1Q80SX8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pif1Q80SX8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pif1Q80SX8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pif1Q80SX8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pif1Q80SX8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pif1Q80SX8 Zxda-201ENSMUST00000117281 2621 ntBASIC22.44■■□□□ 1.18
Pif1Q80SX8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pif1Q80SX8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pif1Q80SX8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pif1Q80SX8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.4■■□□□ 1.18
Pif1Q80SX8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.4■■□□□ 1.18
Pif1Q80SX8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.39■■□□□ 1.17
Pif1Q80SX8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Pif1Q80SX8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC22.38■■□□□ 1.17
Pif1Q80SX8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Pif1Q80SX8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pif1Q80SX8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.32■■□□□ 1.16
Pif1Q80SX8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.31■■□□□ 1.16
Pif1Q80SX8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pif1Q80SX8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
Pif1Q80SX8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.26■■□□□ 1.15
Pif1Q80SX8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Pif1Q80SX8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Pif1Q80SX8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pif1Q80SX8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.19■■□□□ 1.14
Pif1Q80SX8 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pif1Q80SX8 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Pif1Q80SX8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pif1Q80SX8 Gm11175-201ENSMUST00000116172 543 ntBASIC22.14■■□□□ 1.13
Pif1Q80SX8 Mir6538-201ENSMUST00000183713 110 ntBASIC22.14■■□□□ 1.13
Pif1Q80SX8 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pif1Q80SX8 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pif1Q80SX8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Pif1Q80SX8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms