Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pif1Q80SX8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pif1Q80SX8 Gm11599-201ENSMUST00000118720 878 ntBASIC22.5■■□□□ 1.19
Pif1Q80SX8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Pif1Q80SX8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pif1Q80SX8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pif1Q80SX8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pif1Q80SX8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pif1Q80SX8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pif1Q80SX8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pif1Q80SX8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pif1Q80SX8 Zxda-201ENSMUST00000117281 2621 ntBASIC22.44■■□□□ 1.18
Pif1Q80SX8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC22.43■■□□□ 1.18
Pif1Q80SX8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Pif1Q80SX8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Pif1Q80SX8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pif1Q80SX8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Pif1Q80SX8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.4■■□□□ 1.18
Pif1Q80SX8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.4■■□□□ 1.18
Pif1Q80SX8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.39■■□□□ 1.17
Pif1Q80SX8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Pif1Q80SX8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC22.38■■□□□ 1.17
Pif1Q80SX8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Pif1Q80SX8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22.37■■□□□ 1.17
Pif1Q80SX8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Pif1Q80SX8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Pif1Q80SX8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Pif1Q80SX8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pif1Q80SX8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Pif1Q80SX8 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.32■■□□□ 1.16
Pif1Q80SX8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.31■■□□□ 1.16
Pif1Q80SX8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pif1Q80SX8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pif1Q80SX8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
Pif1Q80SX8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.27■■□□□ 1.16
Pif1Q80SX8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pif1Q80SX8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.26■■□□□ 1.15
Pif1Q80SX8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Pif1Q80SX8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pif1Q80SX8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Pif1Q80SX8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Pif1Q80SX8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pif1Q80SX8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pif1Q80SX8 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.19■■□□□ 1.14
Pif1Q80SX8 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pif1Q80SX8 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pif1Q80SX8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pif1Q80SX8 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Pif1Q80SX8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pif1Q80SX8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pif1Q80SX8 Gm11175-201ENSMUST00000116172 543 ntBASIC22.14■■□□□ 1.13
Pif1Q80SX8 Mir6538-201ENSMUST00000183713 110 ntBASIC22.14■■□□□ 1.13
Pif1Q80SX8 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pif1Q80SX8 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Pif1Q80SX8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Pif1Q80SX8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms