Protein–RNA interactions for Protein: Q3U1D9

UPF0602 protein C4orf47 homolog, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q3U1D9 Gm5987-201ENSMUST00000196433 1151 ntBASIC21.29■■□□□ 1
Q3U1D9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.29■■□□□ 1
Q3U1D9 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Q3U1D9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Q3U1D9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.29■■□□□ 1
Q3U1D9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Q3U1D9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Q3U1D9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.28■■□□□ 1
Q3U1D9 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.28■■□□□ 1
Q3U1D9 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Q3U1D9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Q3U1D9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Q3U1D9 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Q3U1D9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Q3U1D9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Q3U1D9 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Q3U1D9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Q3U1D9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Q3U1D9 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.22■□□□□ 0.99
Q3U1D9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Q3U1D9 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Q3U1D9 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Q3U1D9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
Q3U1D9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.19■□□□□ 0.98
Q3U1D9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.19■□□□□ 0.98
Q3U1D9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Q3U1D9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Q3U1D9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Q3U1D9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.18■□□□□ 0.98
Q3U1D9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Q3U1D9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Q3U1D9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.15■□□□□ 0.98
Q3U1D9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Q3U1D9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.15■□□□□ 0.98
Q3U1D9 Gm7432-201ENSMUST00000210343 879 ntBASIC21.15■□□□□ 0.98
Q3U1D9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.14■□□□□ 0.97
Q3U1D9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Q3U1D9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Q3U1D9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Q3U1D9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Q3U1D9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Q3U1D9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Q3U1D9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Q3U1D9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Q3U1D9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.1■□□□□ 0.97
Q3U1D9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Q3U1D9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Q3U1D9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Q3U1D9 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Q3U1D9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.08■□□□□ 0.97
Q3U1D9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Q3U1D9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Q3U1D9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Q3U1D9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Q3U1D9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Q3U1D9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.07■□□□□ 0.96
Q3U1D9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Q3U1D9 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Q3U1D9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.05■□□□□ 0.96
Q3U1D9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Q3U1D9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Q3U1D9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Q3U1D9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.05■□□□□ 0.96
Q3U1D9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Q3U1D9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Q3U1D9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Q3U1D9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
Q3U1D9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.04■□□□□ 0.96
Q3U1D9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Q3U1D9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Q3U1D9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Q3U1D9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.03■□□□□ 0.96
Q3U1D9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Q3U1D9 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Q3U1D9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Q3U1D9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.03■□□□□ 0.96
Q3U1D9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Q3U1D9 Gm11599-201ENSMUST00000118720 878 ntBASIC21.01■□□□□ 0.95
Q3U1D9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.01■□□□□ 0.95
Q3U1D9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Q3U1D9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Q3U1D9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21■□□□□ 0.95
Q3U1D9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21■□□□□ 0.95
Q3U1D9 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Q3U1D9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Q3U1D9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.98■□□□□ 0.95
Q3U1D9 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Q3U1D9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.98■□□□□ 0.95
Q3U1D9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Q3U1D9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Q3U1D9 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC20.97■□□□□ 0.95
Q3U1D9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Q3U1D9 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.97■□□□□ 0.95
Q3U1D9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Q3U1D9 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Q3U1D9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.96■□□□□ 0.95
Q3U1D9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.96■□□□□ 0.95
Q3U1D9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.95■□□□□ 0.95
Q3U1D9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Q3U1D9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms