Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Scn11aQ9R053 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Scn11aQ9R053 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Scn11aQ9R053 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.6■■■□□ 2.49
Scn11aQ9R053 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Scn11aQ9R053 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Scn11aQ9R053 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Scn11aQ9R053 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Scn11aQ9R053 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Scn11aQ9R053 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Scn11aQ9R053 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Scn11aQ9R053 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
Scn11aQ9R053 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Scn11aQ9R053 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Scn11aQ9R053 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Scn11aQ9R053 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Scn11aQ9R053 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
Scn11aQ9R053 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Scn11aQ9R053 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Scn11aQ9R053 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Scn11aQ9R053 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Scn11aQ9R053 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Scn11aQ9R053 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Scn11aQ9R053 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Scn11aQ9R053 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Scn11aQ9R053 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Scn11aQ9R053 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Scn11aQ9R053 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
Scn11aQ9R053 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Scn11aQ9R053 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.42■■■□□ 2.46
Scn11aQ9R053 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Scn11aQ9R053 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
Scn11aQ9R053 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30.41■■■□□ 2.46
Scn11aQ9R053 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Scn11aQ9R053 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
Scn11aQ9R053 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Scn11aQ9R053 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
Scn11aQ9R053 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
Scn11aQ9R053 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Scn11aQ9R053 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Scn11aQ9R053 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Scn11aQ9R053 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.33■■■□□ 2.45
Scn11aQ9R053 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Scn11aQ9R053 Gm6821-201ENSMUST00000107540 542 ntBASIC30.33■■■□□ 2.45
Scn11aQ9R053 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Scn11aQ9R053 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Scn11aQ9R053 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Scn11aQ9R053 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC30.32■■■□□ 2.44
Scn11aQ9R053 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Scn11aQ9R053 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Scn11aQ9R053 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.3■■■□□ 2.44
Scn11aQ9R053 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn11aQ9R053 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn11aQ9R053 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC30.25■■■□□ 2.43
Scn11aQ9R053 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Scn11aQ9R053 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Scn11aQ9R053 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Scn11aQ9R053 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Scn11aQ9R053 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
Scn11aQ9R053 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn11aQ9R053 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Scn11aQ9R053 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Scn11aQ9R053 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.17■■■□□ 2.42
Scn11aQ9R053 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Scn11aQ9R053 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Scn11aQ9R053 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
Scn11aQ9R053 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC30.12■■■□□ 2.41
Scn11aQ9R053 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Scn11aQ9R053 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Scn11aQ9R053 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Scn11aQ9R053 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.1■■■□□ 2.41
Scn11aQ9R053 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Scn11aQ9R053 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC30.09■■■□□ 2.41
Scn11aQ9R053 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.08■■■□□ 2.41
Scn11aQ9R053 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Scn11aQ9R053 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.06■■■□□ 2.4
Scn11aQ9R053 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Scn11aQ9R053 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Scn11aQ9R053 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Scn11aQ9R053 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
Scn11aQ9R053 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
Scn11aQ9R053 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Scn11aQ9R053 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC30.03■■■□□ 2.4
Scn11aQ9R053 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC29.99■■■□□ 2.39
Scn11aQ9R053 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Scn11aQ9R053 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Scn11aQ9R053 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC29.98■■■□□ 2.39
Scn11aQ9R053 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC29.98■■■□□ 2.39
Scn11aQ9R053 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Scn11aQ9R053 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC29.97■■■□□ 2.39
Scn11aQ9R053 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Scn11aQ9R053 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC29.95■■■□□ 2.39
Scn11aQ9R053 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Scn11aQ9R053 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Scn11aQ9R053 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Scn11aQ9R053 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC29.92■■■□□ 2.38
Scn11aQ9R053 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Scn11aQ9R053 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Scn11aQ9R053 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Scn11aQ9R053 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 10 ms