Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Rab11fip3Q8CHD8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Rab11fip3Q8CHD8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Rab11fip3Q8CHD8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
Rab11fip3Q8CHD8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC32.7■■■□□ 2.83
Rab11fip3Q8CHD8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
Rab11fip3Q8CHD8 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
Rab11fip3Q8CHD8 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Rab11fip3Q8CHD8 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Rab11fip3Q8CHD8 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
Rab11fip3Q8CHD8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Rab11fip3Q8CHD8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Rab11fip3Q8CHD8 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
Rab11fip3Q8CHD8 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Rab11fip3Q8CHD8 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Rab11fip3Q8CHD8 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32.63■■■□□ 2.81
Rab11fip3Q8CHD8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Rab11fip3Q8CHD8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Rab11fip3Q8CHD8 Gm9939-201ENSMUST00000067161 1154 ntBASIC32.62■■■□□ 2.81
Rab11fip3Q8CHD8 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Rab11fip3Q8CHD8 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC32.61■■■□□ 2.81
Rab11fip3Q8CHD8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC32.61■■■□□ 2.81
Rab11fip3Q8CHD8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Rab11fip3Q8CHD8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Rab11fip3Q8CHD8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Rab11fip3Q8CHD8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC32.56■■■□□ 2.8
Rab11fip3Q8CHD8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Rab11fip3Q8CHD8 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC32.55■■■□□ 2.8
Rab11fip3Q8CHD8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC32.54■■■□□ 2.8
Rab11fip3Q8CHD8 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Rab11fip3Q8CHD8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC32.53■■■□□ 2.8
Rab11fip3Q8CHD8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Rab11fip3Q8CHD8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Rab11fip3Q8CHD8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC32.52■■■□□ 2.8
Rab11fip3Q8CHD8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
Rab11fip3Q8CHD8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC32.51■■■□□ 2.8
Rab11fip3Q8CHD8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Rab11fip3Q8CHD8 Gm8503-201ENSMUST00000118131 455 ntBASIC32.5■■■□□ 2.79
Rab11fip3Q8CHD8 Gm6345-201ENSMUST00000180378 1691 ntBASIC32.5■■■□□ 2.79
Rab11fip3Q8CHD8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
Rab11fip3Q8CHD8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Rab11fip3Q8CHD8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
Rab11fip3Q8CHD8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Rab11fip3Q8CHD8 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Rab11fip3Q8CHD8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Rab11fip3Q8CHD8 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
Rab11fip3Q8CHD8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC32.44■■■□□ 2.78
Rab11fip3Q8CHD8 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Rab11fip3Q8CHD8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
Rab11fip3Q8CHD8 Gm6821-201ENSMUST00000107540 542 ntBASIC32.42■■■□□ 2.78
Rab11fip3Q8CHD8 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC32.42■■■□□ 2.78
Rab11fip3Q8CHD8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC32.41■■■□□ 2.78
Rab11fip3Q8CHD8 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
Rab11fip3Q8CHD8 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
Rab11fip3Q8CHD8 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Rab11fip3Q8CHD8 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
Rab11fip3Q8CHD8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Rab11fip3Q8CHD8 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC32.36■■■□□ 2.77
Rab11fip3Q8CHD8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Rab11fip3Q8CHD8 Gm42809-201ENSMUST00000198429 1138 ntBASIC32.35■■■□□ 2.77
Rab11fip3Q8CHD8 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Rab11fip3Q8CHD8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC32.33■■■□□ 2.77
Rab11fip3Q8CHD8 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32.32■■■□□ 2.76
Rab11fip3Q8CHD8 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Rab11fip3Q8CHD8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Rab11fip3Q8CHD8 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Rab11fip3Q8CHD8 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC32.3■■■□□ 2.76
Rab11fip3Q8CHD8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC32.29■■■□□ 2.76
Rab11fip3Q8CHD8 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
Rab11fip3Q8CHD8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC32.28■■■□□ 2.76
Rab11fip3Q8CHD8 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
Rab11fip3Q8CHD8 Nkain2-201ENSMUST00000092602 558 ntBASIC32.27■■■□□ 2.76
Rab11fip3Q8CHD8 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC32.26■■■□□ 2.75
Rab11fip3Q8CHD8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
Rab11fip3Q8CHD8 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC32.25■■■□□ 2.75
Rab11fip3Q8CHD8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
Rab11fip3Q8CHD8 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Rab11fip3Q8CHD8 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC32.24■■■□□ 2.75
Rab11fip3Q8CHD8 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Rab11fip3Q8CHD8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Rab11fip3Q8CHD8 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Rab11fip3Q8CHD8 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Rab11fip3Q8CHD8 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
Rab11fip3Q8CHD8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Rab11fip3Q8CHD8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Rab11fip3Q8CHD8 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Rab11fip3Q8CHD8 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC32.17■■■□□ 2.74
Rab11fip3Q8CHD8 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
Rab11fip3Q8CHD8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Rab11fip3Q8CHD8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Rab11fip3Q8CHD8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Rab11fip3Q8CHD8 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Rab11fip3Q8CHD8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Rab11fip3Q8CHD8 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC32.13■■■□□ 2.73
Rab11fip3Q8CHD8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Rab11fip3Q8CHD8 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Rab11fip3Q8CHD8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
Rab11fip3Q8CHD8 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
Rab11fip3Q8CHD8 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC32.07■■■□□ 2.72
Rab11fip3Q8CHD8 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms