Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC36.02■■■■□ 3.36
Usp47Q8BY87 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC36.02■■■■□ 3.36
Usp47Q8BY87 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
Usp47Q8BY87 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC36.02■■■■□ 3.36
Usp47Q8BY87 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC36.01■■■■□ 3.36
Usp47Q8BY87 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.35
Usp47Q8BY87 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC36■■■■□ 3.35
Usp47Q8BY87 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
Usp47Q8BY87 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC35.98■■■■□ 3.35
Usp47Q8BY87 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
Usp47Q8BY87 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
Usp47Q8BY87 Gm6345-201ENSMUST00000180378 1691 ntBASIC35.93■■■■□ 3.34
Usp47Q8BY87 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC35.92■■■■□ 3.34
Usp47Q8BY87 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC35.92■■■■□ 3.34
Usp47Q8BY87 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
Usp47Q8BY87 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Usp47Q8BY87 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC35.9■■■■□ 3.34
Usp47Q8BY87 AC157572.2-201ENSMUST00000226970 908 ntBASIC35.89■■■■□ 3.34
Usp47Q8BY87 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Usp47Q8BY87 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC35.88■■■■□ 3.34
Usp47Q8BY87 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC35.88■■■■□ 3.33
Usp47Q8BY87 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
Usp47Q8BY87 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC35.87■■■■□ 3.33
Usp47Q8BY87 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC35.87■■■■□ 3.33
Usp47Q8BY87 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC35.86■■■■□ 3.33
Usp47Q8BY87 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
Usp47Q8BY87 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC35.85■■■■□ 3.33
Usp47Q8BY87 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
Usp47Q8BY87 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
Usp47Q8BY87 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC35.84■■■■□ 3.33
Usp47Q8BY87 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
Usp47Q8BY87 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
Usp47Q8BY87 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
Usp47Q8BY87 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
Usp47Q8BY87 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
Usp47Q8BY87 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC35.79■■■■□ 3.32
Usp47Q8BY87 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Usp47Q8BY87 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
Usp47Q8BY87 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC35.77■■■■□ 3.32
Usp47Q8BY87 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
Usp47Q8BY87 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC35.74■■■■□ 3.31
Usp47Q8BY87 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Usp47Q8BY87 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
Usp47Q8BY87 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC35.71■■■■□ 3.31
Usp47Q8BY87 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
Usp47Q8BY87 AC153504.1-201ENSMUST00000218379 2290 ntBASIC35.69■■■■□ 3.3
Usp47Q8BY87 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC35.68■■■■□ 3.3
Usp47Q8BY87 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
Usp47Q8BY87 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
Usp47Q8BY87 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
Usp47Q8BY87 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC35.63■■■■□ 3.3
Usp47Q8BY87 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
Usp47Q8BY87 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
Usp47Q8BY87 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC35.61■■■■□ 3.29
Usp47Q8BY87 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC35.61■■■■□ 3.29
Usp47Q8BY87 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC35.61■■■■□ 3.29
Usp47Q8BY87 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC35.58■■■■□ 3.29
Usp47Q8BY87 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
Usp47Q8BY87 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC35.57■■■■□ 3.29
Usp47Q8BY87 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.29
Usp47Q8BY87 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
Usp47Q8BY87 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
Usp47Q8BY87 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC35.56■■■■□ 3.28
Usp47Q8BY87 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC35.51■■■■□ 3.28
Usp47Q8BY87 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC35.51■■■■□ 3.28
Usp47Q8BY87 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC35.51■■■■□ 3.27
Usp47Q8BY87 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
Usp47Q8BY87 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
Usp47Q8BY87 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
Usp47Q8BY87 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
Usp47Q8BY87 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
Usp47Q8BY87 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
Usp47Q8BY87 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
Usp47Q8BY87 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC35.41■■■■□ 3.26
Usp47Q8BY87 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC35.4■■■■□ 3.26
Usp47Q8BY87 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
Usp47Q8BY87 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC35.38■■■■□ 3.25
Usp47Q8BY87 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35.37■■■■□ 3.25
Usp47Q8BY87 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Usp47Q8BY87 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
Usp47Q8BY87 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC35.35■■■■□ 3.25
Usp47Q8BY87 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Usp47Q8BY87 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
Usp47Q8BY87 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
Usp47Q8BY87 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Usp47Q8BY87 Zxda-201ENSMUST00000117281 2621 ntBASIC35.34■■■■□ 3.25
Usp47Q8BY87 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
Usp47Q8BY87 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC35.34■■■■□ 3.25
Usp47Q8BY87 Gm9939-201ENSMUST00000067161 1154 ntBASIC35.33■■■■□ 3.25
Usp47Q8BY87 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
Usp47Q8BY87 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC35.32■■■■□ 3.25
Usp47Q8BY87 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC35.3■■■■□ 3.24
Usp47Q8BY87 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
Usp47Q8BY87 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC35.27■■■■□ 3.24
Usp47Q8BY87 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC35.26■■■■□ 3.24
Usp47Q8BY87 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC35.25■■■■□ 3.23
Usp47Q8BY87 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC35.25■■■■□ 3.23
Usp47Q8BY87 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Usp47Q8BY87 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Usp47Q8BY87 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms