Protein–RNA interactions for Protein: Q3U4B1

Ssbp4, Single stranded DNA binding protein 4, isoform CRA_b, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ssbp4Q3U4B1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ssbp4Q3U4B1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ssbp4Q3U4B1 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ssbp4Q3U4B1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ssbp4Q3U4B1 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ssbp4Q3U4B1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ssbp4Q3U4B1 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ssbp4Q3U4B1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ssbp4Q3U4B1 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ssbp4Q3U4B1 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.01■□□□□ 0.95
Ssbp4Q3U4B1 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ssbp4Q3U4B1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ssbp4Q3U4B1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ssbp4Q3U4B1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ssbp4Q3U4B1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.98■□□□□ 0.95
Ssbp4Q3U4B1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ssbp4Q3U4B1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ssbp4Q3U4B1 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ssbp4Q3U4B1 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ssbp4Q3U4B1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Ssbp4Q3U4B1 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Ssbp4Q3U4B1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.94■□□□□ 0.94
Ssbp4Q3U4B1 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ssbp4Q3U4B1 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ssbp4Q3U4B1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ssbp4Q3U4B1 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ssbp4Q3U4B1 Gm6821-201ENSMUST00000107540 542 ntBASIC20.91■□□□□ 0.94
Ssbp4Q3U4B1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ssbp4Q3U4B1 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ssbp4Q3U4B1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Ssbp4Q3U4B1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Ssbp4Q3U4B1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ssbp4Q3U4B1 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ssbp4Q3U4B1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ssbp4Q3U4B1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
Ssbp4Q3U4B1 Gm8503-201ENSMUST00000118131 455 ntBASIC20.87■□□□□ 0.93
Ssbp4Q3U4B1 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.87■□□□□ 0.93
Ssbp4Q3U4B1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ssbp4Q3U4B1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ssbp4Q3U4B1 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ssbp4Q3U4B1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ssbp4Q3U4B1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ssbp4Q3U4B1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ssbp4Q3U4B1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ssbp4Q3U4B1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ssbp4Q3U4B1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ssbp4Q3U4B1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ssbp4Q3U4B1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ssbp4Q3U4B1 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ssbp4Q3U4B1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ssbp4Q3U4B1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ssbp4Q3U4B1 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.81■□□□□ 0.92
Ssbp4Q3U4B1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ssbp4Q3U4B1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.8■□□□□ 0.92
Ssbp4Q3U4B1 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.8■□□□□ 0.92
Ssbp4Q3U4B1 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ssbp4Q3U4B1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ssbp4Q3U4B1 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ssbp4Q3U4B1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.79■□□□□ 0.92
Ssbp4Q3U4B1 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Ssbp4Q3U4B1 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Ssbp4Q3U4B1 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ssbp4Q3U4B1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.75■□□□□ 0.91
Ssbp4Q3U4B1 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.75■□□□□ 0.91
Ssbp4Q3U4B1 Nkain2-201ENSMUST00000092602 558 ntBASIC20.75■□□□□ 0.91
Ssbp4Q3U4B1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ssbp4Q3U4B1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ssbp4Q3U4B1 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ssbp4Q3U4B1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Ssbp4Q3U4B1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ssbp4Q3U4B1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ssbp4Q3U4B1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Ssbp4Q3U4B1 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ssbp4Q3U4B1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
Ssbp4Q3U4B1 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ssbp4Q3U4B1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ssbp4Q3U4B1 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.7■□□□□ 0.9
Ssbp4Q3U4B1 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.69■□□□□ 0.9
Ssbp4Q3U4B1 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ssbp4Q3U4B1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Ssbp4Q3U4B1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Ssbp4Q3U4B1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ssbp4Q3U4B1 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.66■□□□□ 0.9
Ssbp4Q3U4B1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ssbp4Q3U4B1 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ssbp4Q3U4B1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ssbp4Q3U4B1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ssbp4Q3U4B1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ssbp4Q3U4B1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ssbp4Q3U4B1 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.64■□□□□ 0.89
Ssbp4Q3U4B1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ssbp4Q3U4B1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Ssbp4Q3U4B1 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.63■□□□□ 0.89
Ssbp4Q3U4B1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ssbp4Q3U4B1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms