Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.78■□□□□ 0.6
Trbv17A0A140T8P8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv17A0A140T8P8 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.76■□□□□ 0.59
Trbv17A0A140T8P8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv17A0A140T8P8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv17A0A140T8P8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv17A0A140T8P8 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv17A0A140T8P8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv17A0A140T8P8 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv17A0A140T8P8 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv17A0A140T8P8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv17A0A140T8P8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trbv17A0A140T8P8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trbv17A0A140T8P8 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv17A0A140T8P8 Zxda-201ENSMUST00000117281 2621 ntBASIC18.71■□□□□ 0.59
Trbv17A0A140T8P8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv17A0A140T8P8 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.71■□□□□ 0.59
Trbv17A0A140T8P8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv17A0A140T8P8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv17A0A140T8P8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv17A0A140T8P8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv17A0A140T8P8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv17A0A140T8P8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trbv17A0A140T8P8 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv17A0A140T8P8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv17A0A140T8P8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trbv17A0A140T8P8 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.66■□□□□ 0.58
Trbv17A0A140T8P8 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv17A0A140T8P8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv17A0A140T8P8 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Trbv17A0A140T8P8 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv17A0A140T8P8 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv17A0A140T8P8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv17A0A140T8P8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trbv17A0A140T8P8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv17A0A140T8P8 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.63■□□□□ 0.57
Trbv17A0A140T8P8 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv17A0A140T8P8 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv17A0A140T8P8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv17A0A140T8P8 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv17A0A140T8P8 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv17A0A140T8P8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv17A0A140T8P8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv17A0A140T8P8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv17A0A140T8P8 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv17A0A140T8P8 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv17A0A140T8P8 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.58■□□□□ 0.57
Trbv17A0A140T8P8 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.58■□□□□ 0.56
Trbv17A0A140T8P8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv17A0A140T8P8 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv17A0A140T8P8 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trbv17A0A140T8P8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv17A0A140T8P8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.57■□□□□ 0.56
Trbv17A0A140T8P8 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv17A0A140T8P8 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.57■□□□□ 0.56
Trbv17A0A140T8P8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.56■□□□□ 0.56
Trbv17A0A140T8P8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv17A0A140T8P8 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.56■□□□□ 0.56
Trbv17A0A140T8P8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv17A0A140T8P8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv17A0A140T8P8 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv17A0A140T8P8 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv17A0A140T8P8 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv17A0A140T8P8 Gm45855-201ENSMUST00000212546 880 ntBASIC18.55■□□□□ 0.56
Trbv17A0A140T8P8 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.55■□□□□ 0.56
Trbv17A0A140T8P8 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv17A0A140T8P8 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.54■□□□□ 0.56
Trbv17A0A140T8P8 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Trbv17A0A140T8P8 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv17A0A140T8P8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv17A0A140T8P8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv17A0A140T8P8 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv17A0A140T8P8 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv17A0A140T8P8 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.52■□□□□ 0.55
Trbv17A0A140T8P8 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv17A0A140T8P8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv17A0A140T8P8 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv17A0A140T8P8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.51■□□□□ 0.55
Trbv17A0A140T8P8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv17A0A140T8P8 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.51■□□□□ 0.55
Trbv17A0A140T8P8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv17A0A140T8P8 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
Trbv17A0A140T8P8 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv17A0A140T8P8 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv17A0A140T8P8 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Gm9397-201ENSMUST00000200125 605 ntBASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv17A0A140T8P8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv17A0A140T8P8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv17A0A140T8P8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv17A0A140T8P8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv17A0A140T8P8 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.46■□□□□ 0.55
Trbv17A0A140T8P8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv17A0A140T8P8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv17A0A140T8P8 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv17A0A140T8P8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms