Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col4a4Q9QZR9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col4a4Q9QZR9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Col4a4Q9QZR9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.45■□□□□ 0.7
Col4a4Q9QZR9 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.44■□□□□ 0.7
Col4a4Q9QZR9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.43■□□□□ 0.7
Col4a4Q9QZR9 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Gm11927-201ENSMUST00000118472 759 ntBASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Gm6659-201ENSMUST00000174752 547 ntBASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col4a4Q9QZR9 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Gm30025-201ENSMUST00000218555 728 ntBASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col4a4Q9QZR9 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Gm21814-202ENSMUST00000203277 873 ntBASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Gm10517-202ENSMUST00000192970 758 ntBASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col4a4Q9QZR9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Col4a4Q9QZR9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.39■□□□□ 0.7
Col4a4Q9QZR9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col4a4Q9QZR9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col4a4Q9QZR9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col4a4Q9QZR9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col4a4Q9QZR9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col4a4Q9QZR9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms