Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
Shroom3Q9QXN0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC25.77■■□□□ 1.72
Shroom3Q9QXN0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Shroom3Q9QXN0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Shroom3Q9QXN0 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Shroom3Q9QXN0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
Shroom3Q9QXN0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Shroom3Q9QXN0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.73■■□□□ 1.71
Shroom3Q9QXN0 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Shroom3Q9QXN0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Shroom3Q9QXN0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25.73■■□□□ 1.71
Shroom3Q9QXN0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Shroom3Q9QXN0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
Shroom3Q9QXN0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Shroom3Q9QXN0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
Shroom3Q9QXN0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC25.71■■□□□ 1.71
Shroom3Q9QXN0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Shroom3Q9QXN0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Shroom3Q9QXN0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Shroom3Q9QXN0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC25.68■■□□□ 1.7
Shroom3Q9QXN0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
Shroom3Q9QXN0 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Shroom3Q9QXN0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25.67■■□□□ 1.7
Shroom3Q9QXN0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC25.66■■□□□ 1.7
Shroom3Q9QXN0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Shroom3Q9QXN0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC25.65■■□□□ 1.7
Shroom3Q9QXN0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25.65■■□□□ 1.7
Shroom3Q9QXN0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Shroom3Q9QXN0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Shroom3Q9QXN0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Shroom3Q9QXN0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Shroom3Q9QXN0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Shroom3Q9QXN0 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Shroom3Q9QXN0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Shroom3Q9QXN0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC25.6■■□□□ 1.69
Shroom3Q9QXN0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
Shroom3Q9QXN0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Shroom3Q9QXN0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Shroom3Q9QXN0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
Shroom3Q9QXN0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Shroom3Q9QXN0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Shroom3Q9QXN0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC25.58■■□□□ 1.69
Shroom3Q9QXN0 Gm45855-201ENSMUST00000212546 880 ntBASIC25.57■■□□□ 1.68
Shroom3Q9QXN0 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Shroom3Q9QXN0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.55■■□□□ 1.68
Shroom3Q9QXN0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Shroom3Q9QXN0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC25.54■■□□□ 1.68
Shroom3Q9QXN0 Gm30346-201ENSMUST00000218641 1699 ntBASIC25.54■■□□□ 1.68
Shroom3Q9QXN0 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Shroom3Q9QXN0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
Shroom3Q9QXN0 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Shroom3Q9QXN0 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Shroom3Q9QXN0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Shroom3Q9QXN0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Shroom3Q9QXN0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Shroom3Q9QXN0 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Shroom3Q9QXN0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Shroom3Q9QXN0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
Shroom3Q9QXN0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Shroom3Q9QXN0 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Shroom3Q9QXN0 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Shroom3Q9QXN0 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Shroom3Q9QXN0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Shroom3Q9QXN0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Shroom3Q9QXN0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC25.38■■□□□ 1.65
Shroom3Q9QXN0 Gm9397-201ENSMUST00000200125 605 ntBASIC25.38■■□□□ 1.65
Shroom3Q9QXN0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Shroom3Q9QXN0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Shroom3Q9QXN0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Shroom3Q9QXN0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Shroom3Q9QXN0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Shroom3Q9QXN0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Shroom3Q9QXN0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
Shroom3Q9QXN0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Shroom3Q9QXN0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Shroom3Q9QXN0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Shroom3Q9QXN0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
Shroom3Q9QXN0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Shroom3Q9QXN0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Shroom3Q9QXN0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Shroom3Q9QXN0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Shroom3Q9QXN0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Shroom3Q9QXN0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC25.29■■□□□ 1.64
Shroom3Q9QXN0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
Shroom3Q9QXN0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC25.27■■□□□ 1.64
Shroom3Q9QXN0 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC25.26■■□□□ 1.63
Shroom3Q9QXN0 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
Shroom3Q9QXN0 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Shroom3Q9QXN0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Shroom3Q9QXN0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
Shroom3Q9QXN0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Shroom3Q9QXN0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
Shroom3Q9QXN0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.24■■□□□ 1.63
Shroom3Q9QXN0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Shroom3Q9QXN0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC25.23■■□□□ 1.63
Shroom3Q9QXN0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC25.23■■□□□ 1.63
Shroom3Q9QXN0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Shroom3Q9QXN0 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Shroom3Q9QXN0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC25.22■■□□□ 1.63
Shroom3Q9QXN0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms