Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cdh23Q99PF4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
Cdh23Q99PF4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Cdh23Q99PF4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Cdh23Q99PF4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Cdh23Q99PF4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC27.08■■□□□ 1.92
Cdh23Q99PF4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Cdh23Q99PF4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Cdh23Q99PF4 Gm42809-201ENSMUST00000198429 1138 ntBASIC27.04■■□□□ 1.92
Cdh23Q99PF4 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC27.04■■□□□ 1.92
Cdh23Q99PF4 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27.01■■□□□ 1.92
Cdh23Q99PF4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Cdh23Q99PF4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.99■■□□□ 1.91
Cdh23Q99PF4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.99■■□□□ 1.91
Cdh23Q99PF4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Cdh23Q99PF4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
Cdh23Q99PF4 Mir6538-201ENSMUST00000183713 110 ntBASIC26.98■■□□□ 1.91
Cdh23Q99PF4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Cdh23Q99PF4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.97■■□□□ 1.91
Cdh23Q99PF4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
Cdh23Q99PF4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.97■■□□□ 1.91
Cdh23Q99PF4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC26.95■■□□□ 1.9
Cdh23Q99PF4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Cdh23Q99PF4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.93■■□□□ 1.9
Cdh23Q99PF4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Cdh23Q99PF4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.9■■□□□ 1.9
Cdh23Q99PF4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
Cdh23Q99PF4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Cdh23Q99PF4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.87■■□□□ 1.89
Cdh23Q99PF4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Cdh23Q99PF4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Cdh23Q99PF4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Cdh23Q99PF4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Cdh23Q99PF4 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.84■■□□□ 1.89
Cdh23Q99PF4 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.84■■□□□ 1.89
Cdh23Q99PF4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Cdh23Q99PF4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Cdh23Q99PF4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Cdh23Q99PF4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.8■■□□□ 1.88
Cdh23Q99PF4 Gm7432-201ENSMUST00000210343 879 ntBASIC26.8■■□□□ 1.88
Cdh23Q99PF4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Cdh23Q99PF4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
Cdh23Q99PF4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Cdh23Q99PF4 Gm11175-201ENSMUST00000116172 543 ntBASIC26.79■■□□□ 1.88
Cdh23Q99PF4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Cdh23Q99PF4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Cdh23Q99PF4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Cdh23Q99PF4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Cdh23Q99PF4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.76■■□□□ 1.87
Cdh23Q99PF4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.75■■□□□ 1.87
Cdh23Q99PF4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
Cdh23Q99PF4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Cdh23Q99PF4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Cdh23Q99PF4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.73■■□□□ 1.87
Cdh23Q99PF4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Cdh23Q99PF4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Cdh23Q99PF4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
Cdh23Q99PF4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
Cdh23Q99PF4 Cap2-205ENSMUST00000225824 1634 ntBASIC26.69■■□□□ 1.86
Cdh23Q99PF4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Cdh23Q99PF4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Cdh23Q99PF4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.67■■□□□ 1.86
Cdh23Q99PF4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Cdh23Q99PF4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Cdh23Q99PF4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Cdh23Q99PF4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Cdh23Q99PF4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
Cdh23Q99PF4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Cdh23Q99PF4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Cdh23Q99PF4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.63■■□□□ 1.85
Cdh23Q99PF4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
Cdh23Q99PF4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Cdh23Q99PF4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Cdh23Q99PF4 Gm11599-201ENSMUST00000118720 878 ntBASIC26.61■■□□□ 1.85
Cdh23Q99PF4 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Cdh23Q99PF4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
Cdh23Q99PF4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Cdh23Q99PF4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Cdh23Q99PF4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.58■■□□□ 1.85
Cdh23Q99PF4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cdh23Q99PF4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cdh23Q99PF4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cdh23Q99PF4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cdh23Q99PF4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Cdh23Q99PF4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.52■■□□□ 1.84
Cdh23Q99PF4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cdh23Q99PF4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cdh23Q99PF4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.5■■□□□ 1.83
Cdh23Q99PF4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cdh23Q99PF4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC26.49■■□□□ 1.83
Cdh23Q99PF4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Cdh23Q99PF4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
Cdh23Q99PF4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cdh23Q99PF4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cdh23Q99PF4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.48■■□□□ 1.83
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms