Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
Ddx55Q6ZPL9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Ddx55Q6ZPL9 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
Ddx55Q6ZPL9 Gm9939-201ENSMUST00000067161 1154 ntBASIC30.03■■■□□ 2.4
Ddx55Q6ZPL9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.4
Ddx55Q6ZPL9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
Ddx55Q6ZPL9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Ddx55Q6ZPL9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
Ddx55Q6ZPL9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC29.97■■■□□ 2.39
Ddx55Q6ZPL9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Ddx55Q6ZPL9 Gm8503-201ENSMUST00000118131 455 ntBASIC29.96■■■□□ 2.39
Ddx55Q6ZPL9 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
Ddx55Q6ZPL9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Ddx55Q6ZPL9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Ddx55Q6ZPL9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
Ddx55Q6ZPL9 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC29.93■■■□□ 2.38
Ddx55Q6ZPL9 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC29.92■■■□□ 2.38
Ddx55Q6ZPL9 Gm43863-201ENSMUST00000203822 1192 ntBASIC29.91■■■□□ 2.38
Ddx55Q6ZPL9 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Ddx55Q6ZPL9 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Ddx55Q6ZPL9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Ddx55Q6ZPL9 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC29.87■■■□□ 2.37
Ddx55Q6ZPL9 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Ddx55Q6ZPL9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
Ddx55Q6ZPL9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Ddx55Q6ZPL9 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Ddx55Q6ZPL9 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Ddx55Q6ZPL9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
Ddx55Q6ZPL9 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Ddx55Q6ZPL9 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Ddx55Q6ZPL9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Ddx55Q6ZPL9 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC29.81■■■□□ 2.36
Ddx55Q6ZPL9 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC29.81■■■□□ 2.36
Ddx55Q6ZPL9 Gm6821-201ENSMUST00000107540 542 ntBASIC29.8■■■□□ 2.36
Ddx55Q6ZPL9 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC29.8■■■□□ 2.36
Ddx55Q6ZPL9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Ddx55Q6ZPL9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.78■■■□□ 2.36
Ddx55Q6ZPL9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
Ddx55Q6ZPL9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
Ddx55Q6ZPL9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Ddx55Q6ZPL9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ddx55Q6ZPL9 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
Ddx55Q6ZPL9 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Ddx55Q6ZPL9 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29.73■■■□□ 2.35
Ddx55Q6ZPL9 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Ddx55Q6ZPL9 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Ddx55Q6ZPL9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Ddx55Q6ZPL9 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
Ddx55Q6ZPL9 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
Ddx55Q6ZPL9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.34
Ddx55Q6ZPL9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Ddx55Q6ZPL9 AC157572.2-201ENSMUST00000226970 908 ntBASIC29.67■■■□□ 2.34
Ddx55Q6ZPL9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Ddx55Q6ZPL9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC29.64■■■□□ 2.34
Ddx55Q6ZPL9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Ddx55Q6ZPL9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
Ddx55Q6ZPL9 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Ddx55Q6ZPL9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Ddx55Q6ZPL9 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Ddx55Q6ZPL9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Ddx55Q6ZPL9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Ddx55Q6ZPL9 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC29.59■■■□□ 2.33
Ddx55Q6ZPL9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
Ddx55Q6ZPL9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Ddx55Q6ZPL9 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC29.56■■■□□ 2.32
Ddx55Q6ZPL9 Gm42809-201ENSMUST00000198429 1138 ntBASIC29.55■■■□□ 2.32
Ddx55Q6ZPL9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
Ddx55Q6ZPL9 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Ddx55Q6ZPL9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Ddx55Q6ZPL9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Ddx55Q6ZPL9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
Ddx55Q6ZPL9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Ddx55Q6ZPL9 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC29.52■■■□□ 2.32
Ddx55Q6ZPL9 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Ddx55Q6ZPL9 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC29.5■■■□□ 2.31
Ddx55Q6ZPL9 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
Ddx55Q6ZPL9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddx55Q6ZPL9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddx55Q6ZPL9 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Ddx55Q6ZPL9 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddx55Q6ZPL9 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Ddx55Q6ZPL9 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ddx55Q6ZPL9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Ddx55Q6ZPL9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Ddx55Q6ZPL9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
Ddx55Q6ZPL9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ddx55Q6ZPL9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ddx55Q6ZPL9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ddx55Q6ZPL9 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Ddx55Q6ZPL9 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Ddx55Q6ZPL9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
Ddx55Q6ZPL9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ddx55Q6ZPL9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.38■■■□□ 2.29
Ddx55Q6ZPL9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Ddx55Q6ZPL9 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC29.35■■■□□ 2.29
Ddx55Q6ZPL9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC29.35■■■□□ 2.29
Ddx55Q6ZPL9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ddx55Q6ZPL9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.34■■■□□ 2.29
Ddx55Q6ZPL9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC29.32■■■□□ 2.28
Ddx55Q6ZPL9 Nkain2-201ENSMUST00000092602 558 ntBASIC29.32■■■□□ 2.28
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms