Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Smarca1Q6PGB8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
Smarca1Q6PGB8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
Smarca1Q6PGB8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Smarca1Q6PGB8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Smarca1Q6PGB8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.34■■■□□ 2.13
Smarca1Q6PGB8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Smarca1Q6PGB8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Smarca1Q6PGB8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Smarca1Q6PGB8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
Smarca1Q6PGB8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
Smarca1Q6PGB8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Smarca1Q6PGB8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
Smarca1Q6PGB8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Smarca1Q6PGB8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Smarca1Q6PGB8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Smarca1Q6PGB8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.25■■■□□ 2.11
Smarca1Q6PGB8 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.24■■■□□ 2.11
Smarca1Q6PGB8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Smarca1Q6PGB8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC28.22■■■□□ 2.11
Smarca1Q6PGB8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Smarca1Q6PGB8 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.21■■■□□ 2.11
Smarca1Q6PGB8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
Smarca1Q6PGB8 Zxda-201ENSMUST00000117281 2621 ntBASIC28.19■■■□□ 2.1
Smarca1Q6PGB8 Gm9905-201ENSMUST00000065740 1845 ntBASIC28.18■■■□□ 2.1
Smarca1Q6PGB8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Smarca1Q6PGB8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
Smarca1Q6PGB8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Smarca1Q6PGB8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Smarca1Q6PGB8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
Smarca1Q6PGB8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC28.15■■■□□ 2.1
Smarca1Q6PGB8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC28.15■■■□□ 2.1
Smarca1Q6PGB8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.14■■■□□ 2.1
Smarca1Q6PGB8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Smarca1Q6PGB8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
Smarca1Q6PGB8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Smarca1Q6PGB8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Smarca1Q6PGB8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
Smarca1Q6PGB8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
Smarca1Q6PGB8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Smarca1Q6PGB8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Smarca1Q6PGB8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
Smarca1Q6PGB8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Smarca1Q6PGB8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
Smarca1Q6PGB8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Smarca1Q6PGB8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Smarca1Q6PGB8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Smarca1Q6PGB8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Smarca1Q6PGB8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC28.02■■■□□ 2.08
Smarca1Q6PGB8 Gm43445-201ENSMUST00000198564 2091 ntBASIC28.02■■■□□ 2.08
Smarca1Q6PGB8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smarca1Q6PGB8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Smarca1Q6PGB8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Smarca1Q6PGB8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Smarca1Q6PGB8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Smarca1Q6PGB8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC27.95■■■□□ 2.06
Smarca1Q6PGB8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Smarca1Q6PGB8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.94■■■□□ 2.06
Smarca1Q6PGB8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
Smarca1Q6PGB8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Smarca1Q6PGB8 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC27.93■■■□□ 2.06
Smarca1Q6PGB8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Smarca1Q6PGB8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Smarca1Q6PGB8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
Smarca1Q6PGB8 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Smarca1Q6PGB8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Smarca1Q6PGB8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Smarca1Q6PGB8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.88■■■□□ 2.05
Smarca1Q6PGB8 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Smarca1Q6PGB8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.87■■■□□ 2.05
Smarca1Q6PGB8 Gm6345-201ENSMUST00000180378 1691 ntBASIC27.87■■■□□ 2.05
Smarca1Q6PGB8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
Smarca1Q6PGB8 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Smarca1Q6PGB8 Gm45855-201ENSMUST00000212546 880 ntBASIC27.85■■■□□ 2.05
Smarca1Q6PGB8 Gm9397-201ENSMUST00000200125 605 ntBASIC27.83■■■□□ 2.05
Smarca1Q6PGB8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
Smarca1Q6PGB8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Smarca1Q6PGB8 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Smarca1Q6PGB8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Smarca1Q6PGB8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.81■■■□□ 2.04
Smarca1Q6PGB8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Smarca1Q6PGB8 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC27.8■■■□□ 2.04
Smarca1Q6PGB8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Smarca1Q6PGB8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Smarca1Q6PGB8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC27.79■■■□□ 2.04
Smarca1Q6PGB8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smarca1Q6PGB8 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smarca1Q6PGB8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
Smarca1Q6PGB8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
Smarca1Q6PGB8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Smarca1Q6PGB8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Smarca1Q6PGB8 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.77■■■□□ 2.04
Smarca1Q6PGB8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Smarca1Q6PGB8 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.76■■■□□ 2.04
Smarca1Q6PGB8 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.03
Smarca1Q6PGB8 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Smarca1Q6PGB8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Smarca1Q6PGB8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Smarca1Q6PGB8 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Smarca1Q6PGB8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms