Protein–RNA interactions for Protein: E9Q2N0

Cpsf4l, Cleavage and polyadenylation-specific factor 4-like, mousemouse

Predictions only

Length 280 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4lE9Q2N0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Cpsf4lE9Q2N0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf4lE9Q2N0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.69■■□□□ 1.06
Cpsf4lE9Q2N0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf4lE9Q2N0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.68■■□□□ 1.06
Cpsf4lE9Q2N0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf4lE9Q2N0 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf4lE9Q2N0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf4lE9Q2N0 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf4lE9Q2N0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Cpsf4lE9Q2N0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cpsf4lE9Q2N0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.64■■□□□ 1.05
Cpsf4lE9Q2N0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Cpsf4lE9Q2N0 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cpsf4lE9Q2N0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cpsf4lE9Q2N0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cpsf4lE9Q2N0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Cpsf4lE9Q2N0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cpsf4lE9Q2N0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cpsf4lE9Q2N0 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Cpsf4lE9Q2N0 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.57■■□□□ 1.04
Cpsf4lE9Q2N0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Cpsf4lE9Q2N0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cpsf4lE9Q2N0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cpsf4lE9Q2N0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cpsf4lE9Q2N0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cpsf4lE9Q2N0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Cpsf4lE9Q2N0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Cpsf4lE9Q2N0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.53■■□□□ 1.04
Cpsf4lE9Q2N0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
Cpsf4lE9Q2N0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cpsf4lE9Q2N0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Cpsf4lE9Q2N0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf4lE9Q2N0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf4lE9Q2N0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf4lE9Q2N0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf4lE9Q2N0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cpsf4lE9Q2N0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.48■■□□□ 1.03
Cpsf4lE9Q2N0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf4lE9Q2N0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Cpsf4lE9Q2N0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf4lE9Q2N0 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf4lE9Q2N0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cpsf4lE9Q2N0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.43■■□□□ 1.02
Cpsf4lE9Q2N0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Cpsf4lE9Q2N0 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cpsf4lE9Q2N0 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Cpsf4lE9Q2N0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Cpsf4lE9Q2N0 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.41■■□□□ 1.02
Cpsf4lE9Q2N0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cpsf4lE9Q2N0 Zfp131-205ENSMUST00000223812 663 ntBASIC21.41■■□□□ 1.02
Cpsf4lE9Q2N0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Cpsf4lE9Q2N0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf4lE9Q2N0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf4lE9Q2N0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Cpsf4lE9Q2N0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf4lE9Q2N0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Cpsf4lE9Q2N0 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf4lE9Q2N0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf4lE9Q2N0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf4lE9Q2N0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf4lE9Q2N0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf4lE9Q2N0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf4lE9Q2N0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf4lE9Q2N0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Cpsf4lE9Q2N0 Zxda-201ENSMUST00000117281 2621 ntBASIC21.31■■□□□ 1
Cpsf4lE9Q2N0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf4lE9Q2N0 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf4lE9Q2N0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.3■■□□□ 1
Cpsf4lE9Q2N0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf4lE9Q2N0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cpsf4lE9Q2N0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cpsf4lE9Q2N0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cpsf4lE9Q2N0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.28■■□□□ 1
Cpsf4lE9Q2N0 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cpsf4lE9Q2N0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cpsf4lE9Q2N0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Cpsf4lE9Q2N0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.26■□□□□ 0.99
Cpsf4lE9Q2N0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cpsf4lE9Q2N0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cpsf4lE9Q2N0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cpsf4lE9Q2N0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.24■□□□□ 0.99
Cpsf4lE9Q2N0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cpsf4lE9Q2N0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cpsf4lE9Q2N0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cpsf4lE9Q2N0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cpsf4lE9Q2N0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cpsf4lE9Q2N0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Cpsf4lE9Q2N0 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Cpsf4lE9Q2N0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cpsf4lE9Q2N0 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cpsf4lE9Q2N0 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cpsf4lE9Q2N0 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cpsf4lE9Q2N0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cpsf4lE9Q2N0 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 100 ms