Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trav1A0A075B5Z4 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC23.78■■□□□ 1.4
Trav1A0A075B5Z4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Trav1A0A075B5Z4 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trav1A0A075B5Z4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Trav1A0A075B5Z4 Peli2-204ENSMUST00000226513 1320 ntBASIC23.77■■□□□ 1.4
Trav1A0A075B5Z4 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.76■■□□□ 1.39
Trav1A0A075B5Z4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav1A0A075B5Z4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav1A0A075B5Z4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav1A0A075B5Z4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav1A0A075B5Z4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Trav1A0A075B5Z4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trav1A0A075B5Z4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trav1A0A075B5Z4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
Trav1A0A075B5Z4 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.7■■□□□ 1.39
Trav1A0A075B5Z4 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav1A0A075B5Z4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav1A0A075B5Z4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav1A0A075B5Z4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Trav1A0A075B5Z4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav1A0A075B5Z4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trav1A0A075B5Z4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Trav1A0A075B5Z4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trav1A0A075B5Z4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Trav1A0A075B5Z4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trav1A0A075B5Z4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trav1A0A075B5Z4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Trav1A0A075B5Z4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.64■■□□□ 1.37
Trav1A0A075B5Z4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trav1A0A075B5Z4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav1A0A075B5Z4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav1A0A075B5Z4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav1A0A075B5Z4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav1A0A075B5Z4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trav1A0A075B5Z4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.57■■□□□ 1.36
Trav1A0A075B5Z4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trav1A0A075B5Z4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Trav1A0A075B5Z4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Trav1A0A075B5Z4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.55■■□□□ 1.36
Trav1A0A075B5Z4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Trav1A0A075B5Z4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Trav1A0A075B5Z4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Trav1A0A075B5Z4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Trav1A0A075B5Z4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Trav1A0A075B5Z4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trav1A0A075B5Z4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trav1A0A075B5Z4 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Trav1A0A075B5Z4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Trav1A0A075B5Z4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Trav1A0A075B5Z4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav1A0A075B5Z4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav1A0A075B5Z4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Trav1A0A075B5Z4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Trav1A0A075B5Z4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Trav1A0A075B5Z4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Trav1A0A075B5Z4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.48■■□□□ 1.35
Trav1A0A075B5Z4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trav1A0A075B5Z4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trav1A0A075B5Z4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
Trav1A0A075B5Z4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Trav1A0A075B5Z4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Trav1A0A075B5Z4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trav1A0A075B5Z4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trav1A0A075B5Z4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Trav1A0A075B5Z4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.44■■□□□ 1.34
Trav1A0A075B5Z4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Trav1A0A075B5Z4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.42■■□□□ 1.34
Trav1A0A075B5Z4 Gm24804-201ENSMUST00000174982 85 ntBASIC23.41■■□□□ 1.34
Trav1A0A075B5Z4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.4■■□□□ 1.34
Trav1A0A075B5Z4 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav1A0A075B5Z4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav1A0A075B5Z4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.39■■□□□ 1.33
Trav1A0A075B5Z4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav1A0A075B5Z4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav1A0A075B5Z4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trav1A0A075B5Z4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Trav1A0A075B5Z4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trav1A0A075B5Z4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.36■■□□□ 1.33
Trav1A0A075B5Z4 Amer2-203ENSMUST00000225247 2662 ntBASIC23.36■■□□□ 1.33
Trav1A0A075B5Z4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trav1A0A075B5Z4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Trav1A0A075B5Z4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trav1A0A075B5Z4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trav1A0A075B5Z4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trav1A0A075B5Z4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Trav1A0A075B5Z4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trav1A0A075B5Z4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Trav1A0A075B5Z4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Trav1A0A075B5Z4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
Trav1A0A075B5Z4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
Trav1A0A075B5Z4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trav1A0A075B5Z4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Trav1A0A075B5Z4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Trav1A0A075B5Z4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav1A0A075B5Z4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav1A0A075B5Z4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Trav1A0A075B5Z4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trav1A0A075B5Z4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Trav1A0A075B5Z4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 9 ms