Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv1A0A0B4J1G7 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trbv1A0A0B4J1G7 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trbv1A0A0B4J1G7 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Gm35558-201ENSMUST00000222675 2219 ntBASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv1A0A0B4J1G7 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Gm40881-201ENSMUST00000223397 166 ntBASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Trbv1A0A0B4J1G7 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 AC126028.2-201ENSMUST00000228100 1833 ntBASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trbv1A0A0B4J1G7 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv1A0A0B4J1G7 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv1A0A0B4J1G7 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv1A0A0B4J1G7 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms