Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim63Q38HM4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim63Q38HM4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Trim63Q38HM4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim63Q38HM4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trim63Q38HM4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim63Q38HM4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC16.51■□□□□ 0.23
Trim63Q38HM4 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim63Q38HM4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim63Q38HM4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Gm44949-201ENSMUST00000206423 1450 ntBASIC16.48■□□□□ 0.23
Trim63Q38HM4 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim63Q38HM4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim63Q38HM4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Trim63Q38HM4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Grk6-206ENSMUST00000224995 2971 ntBASIC16.46■□□□□ 0.23
Trim63Q38HM4 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim63Q38HM4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Trim63Q38HM4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC16.46■□□□□ 0.22
Trim63Q38HM4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim63Q38HM4 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms