Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
Trim60Q8VI40 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Trim60Q8VI40 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trim60Q8VI40 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.89■■□□□ 1.89
Trim60Q8VI40 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Trim60Q8VI40 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trim60Q8VI40 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.87■■□□□ 1.89
Trim60Q8VI40 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Trim60Q8VI40 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Trim60Q8VI40 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim60Q8VI40 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim60Q8VI40 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim60Q8VI40 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim60Q8VI40 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
Trim60Q8VI40 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
Trim60Q8VI40 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
Trim60Q8VI40 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Trim60Q8VI40 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Trim60Q8VI40 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Trim60Q8VI40 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim60Q8VI40 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Trim60Q8VI40 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Trim60Q8VI40 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim60Q8VI40 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.67■■□□□ 1.86
Trim60Q8VI40 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim60Q8VI40 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC26.65■■□□□ 1.86
Trim60Q8VI40 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.64■■□□□ 1.86
Trim60Q8VI40 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim60Q8VI40 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Trim60Q8VI40 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim60Q8VI40 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim60Q8VI40 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
Trim60Q8VI40 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim60Q8VI40 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim60Q8VI40 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Trim60Q8VI40 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trim60Q8VI40 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim60Q8VI40 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Trim60Q8VI40 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Trim60Q8VI40 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Trim60Q8VI40 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim60Q8VI40 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim60Q8VI40 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
Trim60Q8VI40 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim60Q8VI40 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.52■■□□□ 1.84
Trim60Q8VI40 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim60Q8VI40 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
Trim60Q8VI40 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim60Q8VI40 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Trim60Q8VI40 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.5■■□□□ 1.83
Trim60Q8VI40 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.49■■□□□ 1.83
Trim60Q8VI40 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim60Q8VI40 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trim60Q8VI40 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.44■■□□□ 1.82
Trim60Q8VI40 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.44■■□□□ 1.82
Trim60Q8VI40 Gm27322-201ENSMUST00000184007 104 ntBASIC26.44■■□□□ 1.82
Trim60Q8VI40 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Trim60Q8VI40 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim60Q8VI40 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Trim60Q8VI40 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trim60Q8VI40 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
Trim60Q8VI40 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
Trim60Q8VI40 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Trim60Q8VI40 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.4■■□□□ 1.82
Trim60Q8VI40 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Trim60Q8VI40 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim60Q8VI40 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Trim60Q8VI40 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim60Q8VI40 Zxda-201ENSMUST00000117281 2621 ntBASIC26.36■■□□□ 1.81
Trim60Q8VI40 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim60Q8VI40 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim60Q8VI40 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim60Q8VI40 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.29■■□□□ 1.8
Trim60Q8VI40 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Trim60Q8VI40 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Trim60Q8VI40 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.28■■□□□ 1.8
Trim60Q8VI40 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Trim60Q8VI40 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim60Q8VI40 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim60Q8VI40 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim60Q8VI40 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim60Q8VI40 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim60Q8VI40 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim60Q8VI40 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Trim60Q8VI40 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.23■■□□□ 1.79
Trim60Q8VI40 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim60Q8VI40 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Trim60Q8VI40 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim60Q8VI40 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
Trim60Q8VI40 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Trim60Q8VI40 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
Trim60Q8VI40 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim60Q8VI40 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.18■■□□□ 1.78
Trim60Q8VI40 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim60Q8VI40 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.15■■□□□ 1.78
Trim60Q8VI40 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Trim60Q8VI40 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.14■■□□□ 1.77
Trim60Q8VI40 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim60Q8VI40 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Trim60Q8VI40 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms