Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Lsm1Q8VC85 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC25.11■■□□□ 1.61
Lsm1Q8VC85 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Lsm1Q8VC85 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Lsm1Q8VC85 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Lsm1Q8VC85 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
Lsm1Q8VC85 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Lsm1Q8VC85 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.07■■□□□ 1.6
Lsm1Q8VC85 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Lsm1Q8VC85 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.02■■□□□ 1.6
Lsm1Q8VC85 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Lsm1Q8VC85 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Lsm1Q8VC85 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
Lsm1Q8VC85 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
Lsm1Q8VC85 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Lsm1Q8VC85 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.98■■□□□ 1.59
Lsm1Q8VC85 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Lsm1Q8VC85 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.97■■□□□ 1.59
Lsm1Q8VC85 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Lsm1Q8VC85 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Lsm1Q8VC85 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Lsm1Q8VC85 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Lsm1Q8VC85 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Lsm1Q8VC85 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Lsm1Q8VC85 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC24.91■■□□□ 1.58
Lsm1Q8VC85 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Lsm1Q8VC85 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Lsm1Q8VC85 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24.87■■□□□ 1.57
Lsm1Q8VC85 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.87■■□□□ 1.57
Lsm1Q8VC85 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Lsm1Q8VC85 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.84■■□□□ 1.57
Lsm1Q8VC85 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC24.84■■□□□ 1.57
Lsm1Q8VC85 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
Lsm1Q8VC85 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC24.83■■□□□ 1.56
Lsm1Q8VC85 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Lsm1Q8VC85 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Lsm1Q8VC85 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Lsm1Q8VC85 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
Lsm1Q8VC85 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Lsm1Q8VC85 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
Lsm1Q8VC85 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Lsm1Q8VC85 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Lsm1Q8VC85 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Lsm1Q8VC85 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.77■■□□□ 1.56
Lsm1Q8VC85 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
Lsm1Q8VC85 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
Lsm1Q8VC85 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC24.76■■□□□ 1.55
Lsm1Q8VC85 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Lsm1Q8VC85 Gm27322-201ENSMUST00000184007 104 ntBASIC24.75■■□□□ 1.55
Lsm1Q8VC85 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Lsm1Q8VC85 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Lsm1Q8VC85 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Lsm1Q8VC85 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Lsm1Q8VC85 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Lsm1Q8VC85 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Lsm1Q8VC85 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Lsm1Q8VC85 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Lsm1Q8VC85 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Lsm1Q8VC85 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Lsm1Q8VC85 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Lsm1Q8VC85 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC24.65■■□□□ 1.54
Lsm1Q8VC85 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
Lsm1Q8VC85 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC24.64■■□□□ 1.54
Lsm1Q8VC85 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Lsm1Q8VC85 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Lsm1Q8VC85 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Lsm1Q8VC85 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Lsm1Q8VC85 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Lsm1Q8VC85 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
Lsm1Q8VC85 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Lsm1Q8VC85 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Lsm1Q8VC85 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
Lsm1Q8VC85 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.6■■□□□ 1.53
Lsm1Q8VC85 Gm9905-201ENSMUST00000065740 1845 ntBASIC24.6■■□□□ 1.53
Lsm1Q8VC85 Zxda-201ENSMUST00000117281 2621 ntBASIC24.6■■□□□ 1.53
Lsm1Q8VC85 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
Lsm1Q8VC85 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Lsm1Q8VC85 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Lsm1Q8VC85 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
Lsm1Q8VC85 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC24.51■■□□□ 1.51
Lsm1Q8VC85 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Lsm1Q8VC85 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Lsm1Q8VC85 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Lsm1Q8VC85 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Lsm1Q8VC85 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Lsm1Q8VC85 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Lsm1Q8VC85 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Lsm1Q8VC85 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Lsm1Q8VC85 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.45■■□□□ 1.5
Lsm1Q8VC85 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Lsm1Q8VC85 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Lsm1Q8VC85 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Lsm1Q8VC85 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Lsm1Q8VC85 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC24.43■■□□□ 1.5
Lsm1Q8VC85 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Lsm1Q8VC85 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Lsm1Q8VC85 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Lsm1Q8VC85 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Lsm1Q8VC85 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC24.38■■□□□ 1.49
Lsm1Q8VC85 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms