Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Prpf40bQ80W14 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Prpf40bQ80W14 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.46■■■□□ 2.47
Prpf40bQ80W14 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Prpf40bQ80W14 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.43■■■□□ 2.46
Prpf40bQ80W14 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
Prpf40bQ80W14 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Prpf40bQ80W14 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Prpf40bQ80W14 Gm45855-201ENSMUST00000212546 880 ntBASIC30.39■■■□□ 2.46
Prpf40bQ80W14 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Prpf40bQ80W14 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Prpf40bQ80W14 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.37■■■□□ 2.45
Prpf40bQ80W14 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Prpf40bQ80W14 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Prpf40bQ80W14 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Prpf40bQ80W14 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Prpf40bQ80W14 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC30.31■■■□□ 2.44
Prpf40bQ80W14 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Prpf40bQ80W14 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Prpf40bQ80W14 Peli2-204ENSMUST00000226513 1320 ntBASIC30.27■■■□□ 2.44
Prpf40bQ80W14 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
Prpf40bQ80W14 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Prpf40bQ80W14 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Prpf40bQ80W14 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.23■■■□□ 2.43
Prpf40bQ80W14 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Prpf40bQ80W14 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
Prpf40bQ80W14 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Prpf40bQ80W14 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Prpf40bQ80W14 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Prpf40bQ80W14 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Prpf40bQ80W14 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Prpf40bQ80W14 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Prpf40bQ80W14 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Prpf40bQ80W14 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Prpf40bQ80W14 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.09■■■□□ 2.41
Prpf40bQ80W14 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Prpf40bQ80W14 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC30.06■■■□□ 2.4
Prpf40bQ80W14 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30.06■■■□□ 2.4
Prpf40bQ80W14 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
Prpf40bQ80W14 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Prpf40bQ80W14 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Prpf40bQ80W14 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29.99■■■□□ 2.39
Prpf40bQ80W14 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Prpf40bQ80W14 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Prpf40bQ80W14 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Prpf40bQ80W14 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Prpf40bQ80W14 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Prpf40bQ80W14 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Prpf40bQ80W14 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
Prpf40bQ80W14 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.96■■■□□ 2.39
Prpf40bQ80W14 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
Prpf40bQ80W14 Gm9397-201ENSMUST00000200125 605 ntBASIC29.95■■■□□ 2.39
Prpf40bQ80W14 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Prpf40bQ80W14 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Prpf40bQ80W14 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Prpf40bQ80W14 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
Prpf40bQ80W14 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Prpf40bQ80W14 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Prpf40bQ80W14 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Prpf40bQ80W14 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Prpf40bQ80W14 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.87■■■□□ 2.37
Prpf40bQ80W14 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC29.86■■■□□ 2.37
Prpf40bQ80W14 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Prpf40bQ80W14 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Prpf40bQ80W14 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC29.84■■■□□ 2.37
Prpf40bQ80W14 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC29.84■■■□□ 2.37
Prpf40bQ80W14 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
Prpf40bQ80W14 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Prpf40bQ80W14 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Prpf40bQ80W14 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Prpf40bQ80W14 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
Prpf40bQ80W14 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC29.76■■■□□ 2.35
Prpf40bQ80W14 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Prpf40bQ80W14 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Prpf40bQ80W14 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC29.75■■■□□ 2.35
Prpf40bQ80W14 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC29.75■■■□□ 2.35
Prpf40bQ80W14 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC29.75■■■□□ 2.35
Prpf40bQ80W14 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Prpf40bQ80W14 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC29.74■■■□□ 2.35
Prpf40bQ80W14 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Prpf40bQ80W14 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Prpf40bQ80W14 Zfp131-207ENSMUST00000224946 1783 ntBASIC29.72■■■□□ 2.35
Prpf40bQ80W14 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC29.71■■■□□ 2.35
Prpf40bQ80W14 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC29.69■■■□□ 2.34
Prpf40bQ80W14 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
Prpf40bQ80W14 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Prpf40bQ80W14 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Prpf40bQ80W14 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
Prpf40bQ80W14 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC29.62■■■□□ 2.33
Prpf40bQ80W14 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Prpf40bQ80W14 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC29.61■■■□□ 2.33
Prpf40bQ80W14 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
Prpf40bQ80W14 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Prpf40bQ80W14 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC29.56■■■□□ 2.32
Prpf40bQ80W14 Mipep-204ENSMUST00000225043 1548 ntBASIC29.55■■■□□ 2.32
Prpf40bQ80W14 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC29.53■■■□□ 2.32
Prpf40bQ80W14 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Prpf40bQ80W14 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
Prpf40bQ80W14 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Prpf40bQ80W14 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms