Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv16A0A0B4J1H3 Mipep-204ENSMUST00000225043 1548 ntBASIC18.84■□□□□ 0.61
Trbv16A0A0B4J1H3 AL845457.1-201ENSMUST00000197244 68 ntBASIC18.84■□□□□ 0.61
Trbv16A0A0B4J1H3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv16A0A0B4J1H3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trbv16A0A0B4J1H3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trbv16A0A0B4J1H3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.8■□□□□ 0.6
Trbv16A0A0B4J1H3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv16A0A0B4J1H3 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv16A0A0B4J1H3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv16A0A0B4J1H3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv16A0A0B4J1H3 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv16A0A0B4J1H3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv16A0A0B4J1H3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv16A0A0B4J1H3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv16A0A0B4J1H3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv16A0A0B4J1H3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv16A0A0B4J1H3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv16A0A0B4J1H3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv16A0A0B4J1H3 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv16A0A0B4J1H3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv16A0A0B4J1H3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trbv16A0A0B4J1H3 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv16A0A0B4J1H3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv16A0A0B4J1H3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trbv16A0A0B4J1H3 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv16A0A0B4J1H3 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv16A0A0B4J1H3 Zxda-201ENSMUST00000117281 2621 ntBASIC18.58■□□□□ 0.57
Trbv16A0A0B4J1H3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trbv16A0A0B4J1H3 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.56■□□□□ 0.56
Trbv16A0A0B4J1H3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv16A0A0B4J1H3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trbv16A0A0B4J1H3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trbv16A0A0B4J1H3 Gm25262-201ENSMUST00000174934 133 ntBASIC18.54■□□□□ 0.56
Trbv16A0A0B4J1H3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv16A0A0B4J1H3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv16A0A0B4J1H3 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC18.5■□□□□ 0.55
Trbv16A0A0B4J1H3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv16A0A0B4J1H3 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trbv16A0A0B4J1H3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv16A0A0B4J1H3 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
Trbv16A0A0B4J1H3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.44■□□□□ 0.54
Trbv16A0A0B4J1H3 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv16A0A0B4J1H3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv16A0A0B4J1H3 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv16A0A0B4J1H3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.41■□□□□ 0.54
Trbv16A0A0B4J1H3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv16A0A0B4J1H3 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv16A0A0B4J1H3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.39■□□□□ 0.53
Trbv16A0A0B4J1H3 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv16A0A0B4J1H3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv16A0A0B4J1H3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv16A0A0B4J1H3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv16A0A0B4J1H3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv16A0A0B4J1H3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv16A0A0B4J1H3 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.31■□□□□ 0.52
Trbv16A0A0B4J1H3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Gm27322-201ENSMUST00000184007 104 ntBASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms