Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv16A0A0B4J1H3 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv16A0A0B4J1H3 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv16A0A0B4J1H3 Mipep-204ENSMUST00000225043 1548 ntBASIC18.84■□□□□ 0.61
Trbv16A0A0B4J1H3 AL845457.1-201ENSMUST00000197244 68 ntBASIC18.84■□□□□ 0.61
Trbv16A0A0B4J1H3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv16A0A0B4J1H3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trbv16A0A0B4J1H3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trbv16A0A0B4J1H3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.8■□□□□ 0.6
Trbv16A0A0B4J1H3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv16A0A0B4J1H3 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv16A0A0B4J1H3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv16A0A0B4J1H3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv16A0A0B4J1H3 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv16A0A0B4J1H3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv16A0A0B4J1H3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv16A0A0B4J1H3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv16A0A0B4J1H3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.7■□□□□ 0.58
Trbv16A0A0B4J1H3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv16A0A0B4J1H3 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv16A0A0B4J1H3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv16A0A0B4J1H3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv16A0A0B4J1H3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv16A0A0B4J1H3 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv16A0A0B4J1H3 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv16A0A0B4J1H3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv16A0A0B4J1H3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv16A0A0B4J1H3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trbv16A0A0B4J1H3 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv16A0A0B4J1H3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv16A0A0B4J1H3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trbv16A0A0B4J1H3 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv16A0A0B4J1H3 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv16A0A0B4J1H3 Zxda-201ENSMUST00000117281 2621 ntBASIC18.58■□□□□ 0.57
Trbv16A0A0B4J1H3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trbv16A0A0B4J1H3 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.56■□□□□ 0.56
Trbv16A0A0B4J1H3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv16A0A0B4J1H3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trbv16A0A0B4J1H3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trbv16A0A0B4J1H3 Gm25262-201ENSMUST00000174934 133 ntBASIC18.54■□□□□ 0.56
Trbv16A0A0B4J1H3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv16A0A0B4J1H3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv16A0A0B4J1H3 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC18.5■□□□□ 0.55
Trbv16A0A0B4J1H3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv16A0A0B4J1H3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv16A0A0B4J1H3 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trbv16A0A0B4J1H3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv16A0A0B4J1H3 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv16A0A0B4J1H3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
Trbv16A0A0B4J1H3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.44■□□□□ 0.54
Trbv16A0A0B4J1H3 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv16A0A0B4J1H3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv16A0A0B4J1H3 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv16A0A0B4J1H3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.42■□□□□ 0.54
Trbv16A0A0B4J1H3 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.41■□□□□ 0.54
Trbv16A0A0B4J1H3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv16A0A0B4J1H3 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv16A0A0B4J1H3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.39■□□□□ 0.53
Trbv16A0A0B4J1H3 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv16A0A0B4J1H3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv16A0A0B4J1H3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trbv16A0A0B4J1H3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv16A0A0B4J1H3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv16A0A0B4J1H3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv16A0A0B4J1H3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv16A0A0B4J1H3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv16A0A0B4J1H3 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.31■□□□□ 0.52
Trbv16A0A0B4J1H3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Gm27322-201ENSMUST00000184007 104 ntBASIC18.3■□□□□ 0.52
Trbv16A0A0B4J1H3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms