Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28bQ8CEG5 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28bQ8CEG5 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.04■□□□□ 0.8
Ccdc28bQ8CEG5 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.04■□□□□ 0.8
Ccdc28bQ8CEG5 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28bQ8CEG5 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28bQ8CEG5 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Ccdc28bQ8CEG5 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28bQ8CEG5 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.02■□□□□ 0.8
Ccdc28bQ8CEG5 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28bQ8CEG5 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28bQ8CEG5 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28bQ8CEG5 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28bQ8CEG5 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28bQ8CEG5 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28bQ8CEG5 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28bQ8CEG5 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20■□□□□ 0.79
Ccdc28bQ8CEG5 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28bQ8CEG5 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28bQ8CEG5 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc28bQ8CEG5 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.97■□□□□ 0.79
Ccdc28bQ8CEG5 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
Ccdc28bQ8CEG5 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.97■□□□□ 0.79
Ccdc28bQ8CEG5 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28bQ8CEG5 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28bQ8CEG5 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28bQ8CEG5 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28bQ8CEG5 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.95■□□□□ 0.78
Ccdc28bQ8CEG5 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28bQ8CEG5 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28bQ8CEG5 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms