Protein–RNA interactions for Protein: Q62059

Vcan, Versican core protein, mousemouse

Predictions only

Length 3,357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VcanQ62059 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VcanQ62059 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VcanQ62059 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VcanQ62059 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VcanQ62059 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VcanQ62059 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VcanQ62059 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VcanQ62059 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VcanQ62059 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VcanQ62059 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
VcanQ62059 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VcanQ62059 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.48■□□□□ 0.71
VcanQ62059 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.48■□□□□ 0.71
VcanQ62059 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
VcanQ62059 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VcanQ62059 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VcanQ62059 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VcanQ62059 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VcanQ62059 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.47■□□□□ 0.71
VcanQ62059 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VcanQ62059 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VcanQ62059 Smad6-203ENSMUST00000179458 273 ntBASIC19.47■□□□□ 0.71
VcanQ62059 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.47■□□□□ 0.71
VcanQ62059 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VcanQ62059 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VcanQ62059 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VcanQ62059 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.46■□□□□ 0.71
VcanQ62059 Gm13148-201ENSMUST00000118892 745 ntBASIC19.46■□□□□ 0.71
VcanQ62059 Gm13168-201ENSMUST00000121771 632 ntBASIC19.46■□□□□ 0.71
VcanQ62059 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VcanQ62059 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VcanQ62059 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.45■□□□□ 0.7
VcanQ62059 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VcanQ62059 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VcanQ62059 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.45■□□□□ 0.7
VcanQ62059 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
VcanQ62059 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VcanQ62059 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VcanQ62059 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VcanQ62059 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VcanQ62059 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.44■□□□□ 0.7
VcanQ62059 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VcanQ62059 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VcanQ62059 Gm13836-201ENSMUST00000121159 501 ntBASIC19.43■□□□□ 0.7
VcanQ62059 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VcanQ62059 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.43■□□□□ 0.7
VcanQ62059 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VcanQ62059 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VcanQ62059 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.43■□□□□ 0.7
VcanQ62059 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
VcanQ62059 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VcanQ62059 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VcanQ62059 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VcanQ62059 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VcanQ62059 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VcanQ62059 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VcanQ62059 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VcanQ62059 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VcanQ62059 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.41■□□□□ 0.7
VcanQ62059 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VcanQ62059 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.4■□□□□ 0.7
VcanQ62059 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.4■□□□□ 0.7
VcanQ62059 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VcanQ62059 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VcanQ62059 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VcanQ62059 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VcanQ62059 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VcanQ62059 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VcanQ62059 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VcanQ62059 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VcanQ62059 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.4■□□□□ 0.7
VcanQ62059 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.39■□□□□ 0.7
VcanQ62059 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VcanQ62059 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.39■□□□□ 0.69
VcanQ62059 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.39■□□□□ 0.69
VcanQ62059 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.39■□□□□ 0.69
VcanQ62059 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.39■□□□□ 0.69
VcanQ62059 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VcanQ62059 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.38■□□□□ 0.69
VcanQ62059 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC19.38■□□□□ 0.69
VcanQ62059 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VcanQ62059 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.38■□□□□ 0.69
VcanQ62059 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VcanQ62059 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
VcanQ62059 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VcanQ62059 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.38■□□□□ 0.69
VcanQ62059 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VcanQ62059 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VcanQ62059 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VcanQ62059 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VcanQ62059 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.36■□□□□ 0.69
VcanQ62059 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VcanQ62059 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms