Protein–RNA interactions for Protein: Q8CC84

Lysmd4, LysM and putative peptidoglycan-binding domain-containing protein 4, mousemouse

Predictions only

Length 293 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd4Q8CC84 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lysmd4Q8CC84 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lysmd4Q8CC84 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lysmd4Q8CC84 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.68■□□□□ 0.58
Lysmd4Q8CC84 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lysmd4Q8CC84 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lysmd4Q8CC84 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lysmd4Q8CC84 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Lysmd4Q8CC84 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Gm9806-201ENSMUST00000051080 552 ntBASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Lysmd4Q8CC84 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lysmd4Q8CC84 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lysmd4Q8CC84 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Scarna2-201ENSMUST00000157560 414 ntBASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lysmd4Q8CC84 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lysmd4Q8CC84 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Gm11687-201ENSMUST00000118911 886 ntBASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Gm16437-201ENSMUST00000025669 507 ntBASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lysmd4Q8CC84 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms