Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sh3rf1Q69ZI1 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sh3rf1Q69ZI1 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Sh3rf1Q69ZI1 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Sh3rf1Q69ZI1 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sh3rf1Q69ZI1 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Rps24-207ENSMUST00000224568 714 ntBASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sh3rf1Q69ZI1 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sh3rf1Q69ZI1 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.05■□□□□ 0.96
Sh3rf1Q69ZI1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sh3rf1Q69ZI1 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Sh3rf1Q69ZI1 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Sh3rf1Q69ZI1 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Sh3rf1Q69ZI1 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sh3rf1Q69ZI1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Sh3rf1Q69ZI1 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sh3rf1Q69ZI1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sh3rf1Q69ZI1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sh3rf1Q69ZI1 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sh3rf1Q69ZI1 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sh3rf1Q69ZI1 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.99■□□□□ 0.95
Sh3rf1Q69ZI1 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Gm15039-201ENSMUST00000118914 875 ntBASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sh3rf1Q69ZI1 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sh3rf1Q69ZI1 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf1Q69ZI1 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf1Q69ZI1 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms