Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav6-1A0A075B5Z8 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 AC116713.1-201ENSMUST00000215074 430 ntBASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trav6-1A0A075B5Z8 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Scarna2-201ENSMUST00000157560 414 ntBASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trav6-1A0A075B5Z8 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav6-1A0A075B5Z8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Gm16437-201ENSMUST00000025669 507 ntBASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.78■□□□□ 0.28
Trav6-1A0A075B5Z8 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Trav6-1A0A075B5Z8 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trav6-1A0A075B5Z8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trav6-1A0A075B5Z8 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav6-1A0A075B5Z8 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav6-1A0A075B5Z8 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav6-1A0A075B5Z8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav6-1A0A075B5Z8 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms