Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trav3-1Q5R1I8 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav3-1Q5R1I8 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Rarb-207ENSMUST00000225921 2756 ntBASIC14.33□□□□□ -0.12
Trav3-1Q5R1I8 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 AC154231.1-201ENSMUST00000220564 2175 ntBASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trav3-1Q5R1I8 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC14.31□□□□□ -0.12
Trav3-1Q5R1I8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trav3-1Q5R1I8 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 AC153962.1-201ENSMUST00000218530 1948 ntBASIC14.29□□□□□ -0.12
Trav3-1Q5R1I8 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 AC122335.2-201ENSMUST00000213901 6181 ntBASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav3-1Q5R1I8 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav3-1Q5R1I8 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav3-1Q5R1I8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav3-1Q5R1I8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav3-1Q5R1I8 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav3-1Q5R1I8 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav3-1Q5R1I8 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav3-1Q5R1I8 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms