Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx54Q8K4L0 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx54Q8K4L0 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC28.34■■■□□ 2.13
Ddx54Q8K4L0 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx54Q8K4L0 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
Ddx54Q8K4L0 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx54Q8K4L0 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx54Q8K4L0 Gm9870-201ENSMUST00000063874 645 ntBASIC28.31■■■□□ 2.12
Ddx54Q8K4L0 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
Ddx54Q8K4L0 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx54Q8K4L0 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx54Q8K4L0 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx54Q8K4L0 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
Ddx54Q8K4L0 Gm26571-201ENSMUST00000181399 666 ntBASIC28.29■■■□□ 2.12
Ddx54Q8K4L0 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ddx54Q8K4L0 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Ddx54Q8K4L0 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx54Q8K4L0 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC28.28■■■□□ 2.12
Ddx54Q8K4L0 Gm27011-201ENSMUST00000182352 972 ntBASIC28.28■■■□□ 2.12
Ddx54Q8K4L0 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx54Q8K4L0 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Gm42569-201ENSMUST00000200539 472 ntBASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx54Q8K4L0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.12
Ddx54Q8K4L0 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
Ddx54Q8K4L0 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC28.26■■■□□ 2.11
Ddx54Q8K4L0 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Wdr70-203ENSMUST00000227371 1130 ntBASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
Ddx54Q8K4L0 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Gm27405-201ENSMUST00000184201 112 ntBASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx54Q8K4L0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
Ddx54Q8K4L0 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx54Q8K4L0 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx54Q8K4L0 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx54Q8K4L0 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddx54Q8K4L0 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC28.21■■■□□ 2.11
Ddx54Q8K4L0 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC28.21■■■□□ 2.11
Ddx54Q8K4L0 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Ddx54Q8K4L0 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Ddx54Q8K4L0 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Ddx54Q8K4L0 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.19■■■□□ 2.1
Ddx54Q8K4L0 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx54Q8K4L0 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Ddx54Q8K4L0 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ddx54Q8K4L0 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ddx54Q8K4L0 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
Ddx54Q8K4L0 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ddx54Q8K4L0 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
Ddx54Q8K4L0 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ddx54Q8K4L0 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Ddx54Q8K4L0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ddx54Q8K4L0 CT025689.6-201ENSMUST00000224991 1104 ntBASIC28.15■■■□□ 2.1
Ddx54Q8K4L0 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC28.15■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms