Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Syne4Q8CII8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
Syne4Q8CII8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Syne4Q8CII8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC32.54■■■□□ 2.8
Syne4Q8CII8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Syne4Q8CII8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
Syne4Q8CII8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Syne4Q8CII8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Syne4Q8CII8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Syne4Q8CII8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Syne4Q8CII8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Syne4Q8CII8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Syne4Q8CII8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Syne4Q8CII8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC32.29■■■□□ 2.76
Syne4Q8CII8 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.24■■■□□ 2.75
Syne4Q8CII8 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.22■■■□□ 2.75
Syne4Q8CII8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC32.21■■■□□ 2.75
Syne4Q8CII8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC32.21■■■□□ 2.75
Syne4Q8CII8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.21■■■□□ 2.75
Syne4Q8CII8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
Syne4Q8CII8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Syne4Q8CII8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Syne4Q8CII8 Zfp131-205ENSMUST00000223812 663 ntBASIC32.08■■■□□ 2.73
Syne4Q8CII8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Syne4Q8CII8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
Syne4Q8CII8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
Syne4Q8CII8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
Syne4Q8CII8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC32.01■■■□□ 2.71
Syne4Q8CII8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Syne4Q8CII8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC32■■■□□ 2.71
Syne4Q8CII8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Syne4Q8CII8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Syne4Q8CII8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
Syne4Q8CII8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
Syne4Q8CII8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Syne4Q8CII8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC31.9■■■□□ 2.7
Syne4Q8CII8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Syne4Q8CII8 AC166822.3-201ENSMUST00000227394 661 ntBASIC31.88■■■□□ 2.69
Syne4Q8CII8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Syne4Q8CII8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Syne4Q8CII8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Syne4Q8CII8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.68
Syne4Q8CII8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.75■■■□□ 2.67
Syne4Q8CII8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Syne4Q8CII8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Syne4Q8CII8 AL845457.1-201ENSMUST00000197244 68 ntBASIC31.72■■■□□ 2.67
Syne4Q8CII8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC31.71■■■□□ 2.67
Syne4Q8CII8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
Syne4Q8CII8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.7■■■□□ 2.67
Syne4Q8CII8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Syne4Q8CII8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Syne4Q8CII8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC31.62■■■□□ 2.65
Syne4Q8CII8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Syne4Q8CII8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Syne4Q8CII8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Syne4Q8CII8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Syne4Q8CII8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Syne4Q8CII8 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Syne4Q8CII8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
Syne4Q8CII8 Gm16148-201ENSMUST00000119653 893 ntBASIC31.41■■■□□ 2.62
Syne4Q8CII8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Syne4Q8CII8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Syne4Q8CII8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Syne4Q8CII8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Syne4Q8CII8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Syne4Q8CII8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Syne4Q8CII8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.61
Syne4Q8CII8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Syne4Q8CII8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
Syne4Q8CII8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Syne4Q8CII8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Syne4Q8CII8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Syne4Q8CII8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Syne4Q8CII8 Tdp2-203ENSMUST00000223804 1136 ntBASIC31.2■■■□□ 2.59
Syne4Q8CII8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Syne4Q8CII8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Syne4Q8CII8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC31.16■■■□□ 2.58
Syne4Q8CII8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Syne4Q8CII8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC31.15■■■□□ 2.58
Syne4Q8CII8 Peli2-204ENSMUST00000226513 1320 ntBASIC31.13■■■□□ 2.57
Syne4Q8CII8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Syne4Q8CII8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Syne4Q8CII8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Syne4Q8CII8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
Syne4Q8CII8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Syne4Q8CII8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Syne4Q8CII8 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC31.07■■■□□ 2.56
Syne4Q8CII8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Syne4Q8CII8 Zfp131-207ENSMUST00000224946 1783 ntBASIC31.07■■■□□ 2.56
Syne4Q8CII8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Syne4Q8CII8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC31.04■■■□□ 2.56
Syne4Q8CII8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC31.02■■■□□ 2.56
Syne4Q8CII8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Syne4Q8CII8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
Syne4Q8CII8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC30.99■■■□□ 2.55
Syne4Q8CII8 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Syne4Q8CII8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Syne4Q8CII8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Syne4Q8CII8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC30.91■■■□□ 2.54
Syne4Q8CII8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 92.5 ms