Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC36.86■■■■□ 3.49
Rab11fip3Q8CHD8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
Rab11fip3Q8CHD8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36.8■■■■□ 3.48
Rab11fip3Q8CHD8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC36.79■■■■□ 3.48
Rab11fip3Q8CHD8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC36.79■■■■□ 3.48
Rab11fip3Q8CHD8 Gm8109-201ENSMUST00000194076 746 ntBASIC36.74■■■■□ 3.47
Rab11fip3Q8CHD8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
Rab11fip3Q8CHD8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
Rab11fip3Q8CHD8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC36.53■■■■□ 3.44
Rab11fip3Q8CHD8 Gm17082-201ENSMUST00000166043 1091 ntBASIC36.48■■■■□ 3.43
Rab11fip3Q8CHD8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
Rab11fip3Q8CHD8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
Rab11fip3Q8CHD8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
Rab11fip3Q8CHD8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
Rab11fip3Q8CHD8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
Rab11fip3Q8CHD8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC36.4■■■■□ 3.42
Rab11fip3Q8CHD8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
Rab11fip3Q8CHD8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC36.33■■■■□ 3.41
Rab11fip3Q8CHD8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC36.31■■■■□ 3.4
Rab11fip3Q8CHD8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC36.28■■■■□ 3.4
Rab11fip3Q8CHD8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
Rab11fip3Q8CHD8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
Rab11fip3Q8CHD8 Gm27322-201ENSMUST00000184007 104 ntBASIC36.27■■■■□ 3.4
Rab11fip3Q8CHD8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC36.26■■■■□ 3.4
Rab11fip3Q8CHD8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Rab11fip3Q8CHD8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.38
Rab11fip3Q8CHD8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC36.18■■■■□ 3.38
Rab11fip3Q8CHD8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC36.06■■■■□ 3.36
Rab11fip3Q8CHD8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC36.06■■■■□ 3.36
Rab11fip3Q8CHD8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC36.04■■■■□ 3.36
Rab11fip3Q8CHD8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC35.97■■■■□ 3.35
Rab11fip3Q8CHD8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC35.95■■■■□ 3.35
Rab11fip3Q8CHD8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Rab11fip3Q8CHD8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Rab11fip3Q8CHD8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC35.78■■■■□ 3.32
Rab11fip3Q8CHD8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC35.75■■■■□ 3.31
Rab11fip3Q8CHD8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
Rab11fip3Q8CHD8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Rab11fip3Q8CHD8 AL845457.1-201ENSMUST00000197244 68 ntBASIC35.72■■■■□ 3.31
Rab11fip3Q8CHD8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
Rab11fip3Q8CHD8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
Rab11fip3Q8CHD8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
Rab11fip3Q8CHD8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC35.67■■■■□ 3.3
Rab11fip3Q8CHD8 Gm24804-201ENSMUST00000174982 85 ntBASIC35.65■■■■□ 3.3
Rab11fip3Q8CHD8 AC166822.3-201ENSMUST00000227394 661 ntBASIC35.64■■■■□ 3.3
Rab11fip3Q8CHD8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC35.62■■■■□ 3.29
Rab11fip3Q8CHD8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
Rab11fip3Q8CHD8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35.61■■■■□ 3.29
Rab11fip3Q8CHD8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35.6■■■■□ 3.29
Rab11fip3Q8CHD8 Zfp131-207ENSMUST00000224946 1783 ntBASIC35.6■■■■□ 3.29
Rab11fip3Q8CHD8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC35.58■■■■□ 3.29
Rab11fip3Q8CHD8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
Rab11fip3Q8CHD8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC35.52■■■■□ 3.28
Rab11fip3Q8CHD8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
Rab11fip3Q8CHD8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
Rab11fip3Q8CHD8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Rab11fip3Q8CHD8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC35.4■■■■□ 3.26
Rab11fip3Q8CHD8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
Rab11fip3Q8CHD8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC35.36■■■■□ 3.25
Rab11fip3Q8CHD8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
Rab11fip3Q8CHD8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
Rab11fip3Q8CHD8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Rab11fip3Q8CHD8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Rab11fip3Q8CHD8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
Rab11fip3Q8CHD8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
Rab11fip3Q8CHD8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
Rab11fip3Q8CHD8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Rab11fip3Q8CHD8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
Rab11fip3Q8CHD8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
Rab11fip3Q8CHD8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
Rab11fip3Q8CHD8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
Rab11fip3Q8CHD8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
Rab11fip3Q8CHD8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
Rab11fip3Q8CHD8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
Rab11fip3Q8CHD8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
Rab11fip3Q8CHD8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Rab11fip3Q8CHD8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Rab11fip3Q8CHD8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC35.03■■■■□ 3.2
Rab11fip3Q8CHD8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
Rab11fip3Q8CHD8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC35■■■■□ 3.19
Rab11fip3Q8CHD8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC35■■■■□ 3.19
Rab11fip3Q8CHD8 Mipep-204ENSMUST00000225043 1548 ntBASIC34.99■■■■□ 3.19
Rab11fip3Q8CHD8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC34.92■■■■□ 3.18
Rab11fip3Q8CHD8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Rab11fip3Q8CHD8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC34.89■■■■□ 3.18
Rab11fip3Q8CHD8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
Rab11fip3Q8CHD8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC34.85■■■■□ 3.17
Rab11fip3Q8CHD8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
Rab11fip3Q8CHD8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Rab11fip3Q8CHD8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Rab11fip3Q8CHD8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
Rab11fip3Q8CHD8 Peli2-204ENSMUST00000226513 1320 ntBASIC34.78■■■■□ 3.16
Rab11fip3Q8CHD8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC34.77■■■■□ 3.16
Rab11fip3Q8CHD8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
Rab11fip3Q8CHD8 Zfp131-205ENSMUST00000223812 663 ntBASIC34.74■■■■□ 3.15
Rab11fip3Q8CHD8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
Rab11fip3Q8CHD8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Rab11fip3Q8CHD8 Gm16148-201ENSMUST00000119653 893 ntBASIC34.71■■■■□ 3.15
Rab11fip3Q8CHD8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC34.7■■■■□ 3.15
Rab11fip3Q8CHD8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms