Protein–RNA interactions for Protein: Q8CGV8

Mmp28, Matrix metallopeptidase 28 (epilysin), mousemouse

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp28Q8CGV8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Mmp28Q8CGV8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Mmp28Q8CGV8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.08■■□□□ 1.29
Mmp28Q8CGV8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Mmp28Q8CGV8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.06■■□□□ 1.28
Mmp28Q8CGV8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Mmp28Q8CGV8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Mmp28Q8CGV8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Mmp28Q8CGV8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Mmp28Q8CGV8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Mmp28Q8CGV8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Mmp28Q8CGV8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Mmp28Q8CGV8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Mmp28Q8CGV8 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Mmp28Q8CGV8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Mmp28Q8CGV8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Mmp28Q8CGV8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Mmp28Q8CGV8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
Mmp28Q8CGV8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Mmp28Q8CGV8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC22.78■■□□□ 1.24
Mmp28Q8CGV8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Mmp28Q8CGV8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Mmp28Q8CGV8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.71■■□□□ 1.23
Mmp28Q8CGV8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.7■■□□□ 1.22
Mmp28Q8CGV8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Mmp28Q8CGV8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Mmp28Q8CGV8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Mmp28Q8CGV8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Mmp28Q8CGV8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Mmp28Q8CGV8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Mmp28Q8CGV8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Mmp28Q8CGV8 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Mmp28Q8CGV8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Mmp28Q8CGV8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Mmp28Q8CGV8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Mmp28Q8CGV8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Mmp28Q8CGV8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
Mmp28Q8CGV8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Mmp28Q8CGV8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Mmp28Q8CGV8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Mmp28Q8CGV8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Mmp28Q8CGV8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.46■■□□□ 1.19
Mmp28Q8CGV8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Mmp28Q8CGV8 Gm25238-201ENSMUST00000174914 89 ntBASIC22.42■■□□□ 1.18
Mmp28Q8CGV8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Mmp28Q8CGV8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Mmp28Q8CGV8 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.38■■□□□ 1.17
Mmp28Q8CGV8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Mmp28Q8CGV8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Mmp28Q8CGV8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Mmp28Q8CGV8 Gm2415-204ENSMUST00000190235 2004 ntBASIC22.35■■□□□ 1.17
Mmp28Q8CGV8 Gm27325-201ENSMUST00000175467 74 ntBASIC22.33■■□□□ 1.17
Mmp28Q8CGV8 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.32■■□□□ 1.16
Mmp28Q8CGV8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Mmp28Q8CGV8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Mmp28Q8CGV8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
Mmp28Q8CGV8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Mmp28Q8CGV8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Mmp28Q8CGV8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.28■■□□□ 1.16
Mmp28Q8CGV8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Mmp28Q8CGV8 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Mmp28Q8CGV8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Mmp28Q8CGV8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.24■■□□□ 1.15
Mmp28Q8CGV8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Mmp28Q8CGV8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Mmp28Q8CGV8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Mmp28Q8CGV8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22.2■■□□□ 1.14
Mmp28Q8CGV8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
Mmp28Q8CGV8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Mmp28Q8CGV8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Mmp28Q8CGV8 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Mmp28Q8CGV8 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Mmp28Q8CGV8 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Mmp28Q8CGV8 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Mmp28Q8CGV8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Mmp28Q8CGV8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Mmp28Q8CGV8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Mmp28Q8CGV8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Mmp28Q8CGV8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Mmp28Q8CGV8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.1■■□□□ 1.13
Mmp28Q8CGV8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Mmp28Q8CGV8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
Mmp28Q8CGV8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Mmp28Q8CGV8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Mmp28Q8CGV8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Mmp28Q8CGV8 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Mmp28Q8CGV8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Mmp28Q8CGV8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
Mmp28Q8CGV8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Mmp28Q8CGV8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Mmp28Q8CGV8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Mmp28Q8CGV8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Mmp28Q8CGV8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Mmp28Q8CGV8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Mmp28Q8CGV8 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Mmp28Q8CGV8 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Mmp28Q8CGV8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Mmp28Q8CGV8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Mmp28Q8CGV8 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.98■■□□□ 1.11
Mmp28Q8CGV8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms