Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Pif1Q80SX8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Pif1Q80SX8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Pif1Q80SX8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Pif1Q80SX8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Pif1Q80SX8 Gm27322-201ENSMUST00000184007 104 ntBASIC25.75■■□□□ 1.71
Pif1Q80SX8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Pif1Q80SX8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Pif1Q80SX8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Pif1Q80SX8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.7■■□□□ 1.7
Pif1Q80SX8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC25.69■■□□□ 1.7
Pif1Q80SX8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.65■■□□□ 1.7
Pif1Q80SX8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Pif1Q80SX8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pif1Q80SX8 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.63■■□□□ 1.69
Pif1Q80SX8 Gm24804-201ENSMUST00000174982 85 ntBASIC25.58■■□□□ 1.69
Pif1Q80SX8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Pif1Q80SX8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Pif1Q80SX8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC25.45■■□□□ 1.66
Pif1Q80SX8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Pif1Q80SX8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Pif1Q80SX8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Pif1Q80SX8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC25.36■■□□□ 1.65
Pif1Q80SX8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Pif1Q80SX8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Pif1Q80SX8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Pif1Q80SX8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Pif1Q80SX8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Pif1Q80SX8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Pif1Q80SX8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Pif1Q80SX8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.2■■□□□ 1.62
Pif1Q80SX8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Pif1Q80SX8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.18■■□□□ 1.62
Pif1Q80SX8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Pif1Q80SX8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Pif1Q80SX8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Pif1Q80SX8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Pif1Q80SX8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Pif1Q80SX8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Pif1Q80SX8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
Pif1Q80SX8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Pif1Q80SX8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Pif1Q80SX8 AC166822.3-201ENSMUST00000227394 661 ntBASIC25.09■■□□□ 1.61
Pif1Q80SX8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Pif1Q80SX8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Pif1Q80SX8 AL845457.1-201ENSMUST00000197244 68 ntBASIC25.05■■□□□ 1.6
Pif1Q80SX8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Pif1Q80SX8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Pif1Q80SX8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.03■■□□□ 1.6
Pif1Q80SX8 Zfp131-205ENSMUST00000223812 663 ntBASIC25.01■■□□□ 1.59
Pif1Q80SX8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Pif1Q80SX8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Pif1Q80SX8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Pif1Q80SX8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
Pif1Q80SX8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
Pif1Q80SX8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
Pif1Q80SX8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Pif1Q80SX8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC24.86■■□□□ 1.57
Pif1Q80SX8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Pif1Q80SX8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Pif1Q80SX8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Pif1Q80SX8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Pif1Q80SX8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Pif1Q80SX8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Pif1Q80SX8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.75■■□□□ 1.55
Pif1Q80SX8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Pif1Q80SX8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Pif1Q80SX8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
Pif1Q80SX8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Pif1Q80SX8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pif1Q80SX8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pif1Q80SX8 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.66■■□□□ 1.54
Pif1Q80SX8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Pif1Q80SX8 Gm16148-201ENSMUST00000119653 893 ntBASIC24.65■■□□□ 1.54
Pif1Q80SX8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Pif1Q80SX8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Pif1Q80SX8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
Pif1Q80SX8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Pif1Q80SX8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Pif1Q80SX8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pif1Q80SX8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.54■■□□□ 1.52
Pif1Q80SX8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Pif1Q80SX8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Pif1Q80SX8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Pif1Q80SX8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Pif1Q80SX8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Pif1Q80SX8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Pif1Q80SX8 Peli2-204ENSMUST00000226513 1320 ntBASIC24.5■■□□□ 1.51
Pif1Q80SX8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Pif1Q80SX8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
Pif1Q80SX8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Pif1Q80SX8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Pif1Q80SX8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Pif1Q80SX8 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Pif1Q80SX8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24.45■■□□□ 1.5
Pif1Q80SX8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pif1Q80SX8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pif1Q80SX8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pif1Q80SX8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
Pif1Q80SX8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms