Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Rnf220Q6PDX6 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Rnf220Q6PDX6 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Rnf220Q6PDX6 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25.63■■□□□ 1.69
Rnf220Q6PDX6 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Rnf220Q6PDX6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
Rnf220Q6PDX6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Rnf220Q6PDX6 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Rnf220Q6PDX6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Rnf220Q6PDX6 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
Rnf220Q6PDX6 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Rnf220Q6PDX6 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Rnf220Q6PDX6 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Rnf220Q6PDX6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Rnf220Q6PDX6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Rnf220Q6PDX6 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.38■■□□□ 1.65
Rnf220Q6PDX6 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
Rnf220Q6PDX6 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Rnf220Q6PDX6 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Rnf220Q6PDX6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Rnf220Q6PDX6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.32■■□□□ 1.64
Rnf220Q6PDX6 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
Rnf220Q6PDX6 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Rnf220Q6PDX6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Rnf220Q6PDX6 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Rnf220Q6PDX6 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Rnf220Q6PDX6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Rnf220Q6PDX6 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Rnf220Q6PDX6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
Rnf220Q6PDX6 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Rnf220Q6PDX6 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Rnf220Q6PDX6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.09■■□□□ 1.61
Rnf220Q6PDX6 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rnf220Q6PDX6 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rnf220Q6PDX6 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rnf220Q6PDX6 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rnf220Q6PDX6 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rnf220Q6PDX6 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25■■□□□ 1.59
Rnf220Q6PDX6 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Rnf220Q6PDX6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Rnf220Q6PDX6 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Rnf220Q6PDX6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Rnf220Q6PDX6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.89■■□□□ 1.57
Rnf220Q6PDX6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24.87■■□□□ 1.57
Rnf220Q6PDX6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Rnf220Q6PDX6 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Rnf220Q6PDX6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
Rnf220Q6PDX6 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Rnf220Q6PDX6 Gm27325-201ENSMUST00000175467 74 ntBASIC24.82■■□□□ 1.56
Rnf220Q6PDX6 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Rnf220Q6PDX6 Gm9905-201ENSMUST00000065740 1845 ntBASIC24.81■■□□□ 1.56
Rnf220Q6PDX6 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.81■■□□□ 1.56
Rnf220Q6PDX6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Rnf220Q6PDX6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Rnf220Q6PDX6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Rnf220Q6PDX6 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Rnf220Q6PDX6 Gm2415-204ENSMUST00000190235 2004 ntBASIC24.77■■□□□ 1.56
Rnf220Q6PDX6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Rnf220Q6PDX6 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Rnf220Q6PDX6 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
Rnf220Q6PDX6 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC24.73■■□□□ 1.55
Rnf220Q6PDX6 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Rnf220Q6PDX6 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Rnf220Q6PDX6 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Rnf220Q6PDX6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Rnf220Q6PDX6 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Rnf220Q6PDX6 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.7■■□□□ 1.54
Rnf220Q6PDX6 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Rnf220Q6PDX6 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Rnf220Q6PDX6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Rnf220Q6PDX6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Rnf220Q6PDX6 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Rnf220Q6PDX6 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
Rnf220Q6PDX6 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Rnf220Q6PDX6 Gm25238-201ENSMUST00000174914 89 ntBASIC24.61■■□□□ 1.53
Rnf220Q6PDX6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Rnf220Q6PDX6 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Rnf220Q6PDX6 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Rnf220Q6PDX6 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Rnf220Q6PDX6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Rnf220Q6PDX6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Rnf220Q6PDX6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC24.55■■□□□ 1.52
Rnf220Q6PDX6 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Rnf220Q6PDX6 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
Rnf220Q6PDX6 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.53■■□□□ 1.52
Rnf220Q6PDX6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24.52■■□□□ 1.52
Rnf220Q6PDX6 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Rnf220Q6PDX6 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.5■■□□□ 1.51
Rnf220Q6PDX6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.5■■□□□ 1.51
Rnf220Q6PDX6 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
Rnf220Q6PDX6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Rnf220Q6PDX6 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Rnf220Q6PDX6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
Rnf220Q6PDX6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Rnf220Q6PDX6 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC24.45■■□□□ 1.5
Rnf220Q6PDX6 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Rnf220Q6PDX6 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Rnf220Q6PDX6 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Rnf220Q6PDX6 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Rnf220Q6PDX6 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms