Protein–RNA interactions for Protein: Q66PY1

Scube3, Signal peptide, CUB and EGF-like domain-containing protein 3, mousemouse

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scube3Q66PY1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Scube3Q66PY1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Scube3Q66PY1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC29.33■■■□□ 2.29
Scube3Q66PY1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Scube3Q66PY1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Scube3Q66PY1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
Scube3Q66PY1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Scube3Q66PY1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Scube3Q66PY1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
Scube3Q66PY1 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.24■■■□□ 2.27
Scube3Q66PY1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
Scube3Q66PY1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.23■■■□□ 2.27
Scube3Q66PY1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
Scube3Q66PY1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.14■■■□□ 2.26
Scube3Q66PY1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.25
Scube3Q66PY1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Scube3Q66PY1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Scube3Q66PY1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Scube3Q66PY1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.04■■■□□ 2.24
Scube3Q66PY1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
Scube3Q66PY1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
Scube3Q66PY1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Scube3Q66PY1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
Scube3Q66PY1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.95■■■□□ 2.22
Scube3Q66PY1 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Scube3Q66PY1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Scube3Q66PY1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC28.89■■■□□ 2.22
Scube3Q66PY1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Scube3Q66PY1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Scube3Q66PY1 Gm26115-201ENSMUST00000175605 87 ntBASIC28.82■■■□□ 2.2
Scube3Q66PY1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Scube3Q66PY1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Scube3Q66PY1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28.77■■■□□ 2.2
Scube3Q66PY1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC28.73■■■□□ 2.19
Scube3Q66PY1 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Scube3Q66PY1 Gm8109-201ENSMUST00000194076 746 ntBASIC28.72■■■□□ 2.19
Scube3Q66PY1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Scube3Q66PY1 Zfp131-207ENSMUST00000224946 1783 ntBASIC28.69■■■□□ 2.18
Scube3Q66PY1 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.67■■■□□ 2.18
Scube3Q66PY1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC28.66■■■□□ 2.18
Scube3Q66PY1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Scube3Q66PY1 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Scube3Q66PY1 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Scube3Q66PY1 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Scube3Q66PY1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
Scube3Q66PY1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
Scube3Q66PY1 Gm27322-201ENSMUST00000184007 104 ntBASIC28.54■■■□□ 2.16
Scube3Q66PY1 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Scube3Q66PY1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Scube3Q66PY1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
Scube3Q66PY1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.49■■■□□ 2.15
Scube3Q66PY1 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Scube3Q66PY1 AL845457.1-201ENSMUST00000197244 68 ntBASIC28.47■■■□□ 2.15
Scube3Q66PY1 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Scube3Q66PY1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Scube3Q66PY1 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Scube3Q66PY1 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scube3Q66PY1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scube3Q66PY1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.42■■■□□ 2.14
Scube3Q66PY1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Scube3Q66PY1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Scube3Q66PY1 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Scube3Q66PY1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Scube3Q66PY1 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Scube3Q66PY1 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Scube3Q66PY1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28.22■■■□□ 2.11
Scube3Q66PY1 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Scube3Q66PY1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Scube3Q66PY1 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.16■■■□□ 2.1
Scube3Q66PY1 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Scube3Q66PY1 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Scube3Q66PY1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Scube3Q66PY1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Scube3Q66PY1 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Scube3Q66PY1 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Scube3Q66PY1 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Scube3Q66PY1 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Scube3Q66PY1 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Scube3Q66PY1 Mipep-204ENSMUST00000225043 1548 ntBASIC28.05■■■□□ 2.08
Scube3Q66PY1 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
Scube3Q66PY1 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Scube3Q66PY1 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Scube3Q66PY1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Scube3Q66PY1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Scube3Q66PY1 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.07
Scube3Q66PY1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
Scube3Q66PY1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC27.94■■■□□ 2.06
Scube3Q66PY1 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Scube3Q66PY1 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Scube3Q66PY1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Scube3Q66PY1 Gm24804-201ENSMUST00000174982 85 ntBASIC27.87■■■□□ 2.05
Scube3Q66PY1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Scube3Q66PY1 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
Scube3Q66PY1 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Scube3Q66PY1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Scube3Q66PY1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Scube3Q66PY1 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC27.8■■■□□ 2.04
Scube3Q66PY1 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Scube3Q66PY1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
Scube3Q66PY1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.76■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms