Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.55■■□□□ 1.36
Trav6d-4Q5R1I0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
Trav6d-4Q5R1I0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trav6d-4Q5R1I0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Trav6d-4Q5R1I0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav6d-4Q5R1I0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.51■■□□□ 1.35
Trav6d-4Q5R1I0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Trav6d-4Q5R1I0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav6d-4Q5R1I0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav6d-4Q5R1I0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trav6d-4Q5R1I0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC23.42■■□□□ 1.34
Trav6d-4Q5R1I0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.41■■□□□ 1.34
Trav6d-4Q5R1I0 Gm26115-201ENSMUST00000175605 87 ntBASIC23.4■■□□□ 1.34
Trav6d-4Q5R1I0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Trav6d-4Q5R1I0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trav6d-4Q5R1I0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Trav6d-4Q5R1I0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trav6d-4Q5R1I0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trav6d-4Q5R1I0 Gm8109-201ENSMUST00000194076 746 ntBASIC23.28■■□□□ 1.32
Trav6d-4Q5R1I0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav6d-4Q5R1I0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Trav6d-4Q5R1I0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.21■■□□□ 1.31
Trav6d-4Q5R1I0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav6d-4Q5R1I0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav6d-4Q5R1I0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.17■■□□□ 1.3
Trav6d-4Q5R1I0 Gm17082-201ENSMUST00000166043 1091 ntBASIC23.15■■□□□ 1.3
Trav6d-4Q5R1I0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trav6d-4Q5R1I0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trav6d-4Q5R1I0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trav6d-4Q5R1I0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trav6d-4Q5R1I0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trav6d-4Q5R1I0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
Trav6d-4Q5R1I0 Gm27322-201ENSMUST00000184007 104 ntBASIC23.06■■□□□ 1.28
Trav6d-4Q5R1I0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trav6d-4Q5R1I0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
Trav6d-4Q5R1I0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav6d-4Q5R1I0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trav6d-4Q5R1I0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.99■■□□□ 1.27
Trav6d-4Q5R1I0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Trav6d-4Q5R1I0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Trav6d-4Q5R1I0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Trav6d-4Q5R1I0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
Trav6d-4Q5R1I0 Zfp131-207ENSMUST00000224946 1783 ntBASIC22.91■■□□□ 1.26
Trav6d-4Q5R1I0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Trav6d-4Q5R1I0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.91■■□□□ 1.26
Trav6d-4Q5R1I0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav6d-4Q5R1I0 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.86■■□□□ 1.25
Trav6d-4Q5R1I0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Trav6d-4Q5R1I0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav6d-4Q5R1I0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav6d-4Q5R1I0 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC22.85■■□□□ 1.25
Trav6d-4Q5R1I0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trav6d-4Q5R1I0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trav6d-4Q5R1I0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Trav6d-4Q5R1I0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav6d-4Q5R1I0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Trav6d-4Q5R1I0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.69■■□□□ 1.22
Trav6d-4Q5R1I0 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.69■■□□□ 1.22
Trav6d-4Q5R1I0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav6d-4Q5R1I0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav6d-4Q5R1I0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trav6d-4Q5R1I0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.6■■□□□ 1.21
Trav6d-4Q5R1I0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav6d-4Q5R1I0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav6d-4Q5R1I0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Trav6d-4Q5R1I0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav6d-4Q5R1I0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav6d-4Q5R1I0 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trav6d-4Q5R1I0 Gm24804-201ENSMUST00000174982 85 ntBASIC22.56■■□□□ 1.2
Trav6d-4Q5R1I0 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trav6d-4Q5R1I0 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav6d-4Q5R1I0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trav6d-4Q5R1I0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav6d-4Q5R1I0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav6d-4Q5R1I0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22.48■■□□□ 1.19
Trav6d-4Q5R1I0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Trav6d-4Q5R1I0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Trav6d-4Q5R1I0 Mipep-204ENSMUST00000225043 1548 ntBASIC22.47■■□□□ 1.19
Trav6d-4Q5R1I0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6d-4Q5R1I0 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6d-4Q5R1I0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6d-4Q5R1I0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav6d-4Q5R1I0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Trav6d-4Q5R1I0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav6d-4Q5R1I0 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6d-4Q5R1I0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Trav6d-4Q5R1I0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6d-4Q5R1I0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6d-4Q5R1I0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav6d-4Q5R1I0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav6d-4Q5R1I0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav6d-4Q5R1I0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav6d-4Q5R1I0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Trav6d-4Q5R1I0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trav6d-4Q5R1I0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trav6d-4Q5R1I0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Trav6d-4Q5R1I0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Trav6d-4Q5R1I0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav6d-4Q5R1I0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav6d-4Q5R1I0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms