Protein–RNA interactions for Protein: Q5H8C4

Vps13a, Vacuolar protein sorting-associated protein 13A, mousemouse

Predictions only

Length 3,166 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps13aQ5H8C4 Psd-208ENSMUST00000224556 2034 ntBASIC29.04■■■□□ 2.24
Vps13aQ5H8C4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Vps13aQ5H8C4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
Vps13aQ5H8C4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.94■■■□□ 2.22
Vps13aQ5H8C4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Vps13aQ5H8C4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.89■■■□□ 2.21
Vps13aQ5H8C4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Vps13aQ5H8C4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.76■■■□□ 2.19
Vps13aQ5H8C4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.74■■■□□ 2.19
Vps13aQ5H8C4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Vps13aQ5H8C4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Vps13aQ5H8C4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.69■■■□□ 2.18
Vps13aQ5H8C4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Vps13aQ5H8C4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Vps13aQ5H8C4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.67■■■□□ 2.18
Vps13aQ5H8C4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Vps13aQ5H8C4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.65■■■□□ 2.18
Vps13aQ5H8C4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Vps13aQ5H8C4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Vps13aQ5H8C4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Vps13aQ5H8C4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.5■■■□□ 2.15
Vps13aQ5H8C4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Vps13aQ5H8C4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC28.5■■■□□ 2.15
Vps13aQ5H8C4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Vps13aQ5H8C4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Vps13aQ5H8C4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
Vps13aQ5H8C4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Vps13aQ5H8C4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.42■■■□□ 2.14
Vps13aQ5H8C4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Vps13aQ5H8C4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.34■■■□□ 2.13
Vps13aQ5H8C4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Vps13aQ5H8C4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Vps13aQ5H8C4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
Vps13aQ5H8C4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Vps13aQ5H8C4 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.28■■■□□ 2.12
Vps13aQ5H8C4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Vps13aQ5H8C4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
Vps13aQ5H8C4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.23■■■□□ 2.11
Vps13aQ5H8C4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Vps13aQ5H8C4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Vps13aQ5H8C4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
Vps13aQ5H8C4 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.17■■■□□ 2.1
Vps13aQ5H8C4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
Vps13aQ5H8C4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Vps13aQ5H8C4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Vps13aQ5H8C4 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.14■■■□□ 2.1
Vps13aQ5H8C4 Gm16148-201ENSMUST00000119653 893 ntBASIC28.11■■■□□ 2.09
Vps13aQ5H8C4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.11■■■□□ 2.09
Vps13aQ5H8C4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Vps13aQ5H8C4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Vps13aQ5H8C4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Vps13aQ5H8C4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Vps13aQ5H8C4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Vps13aQ5H8C4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Vps13aQ5H8C4 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.03■■■□□ 2.08
Vps13aQ5H8C4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Vps13aQ5H8C4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Vps13aQ5H8C4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Vps13aQ5H8C4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.99■■■□□ 2.07
Vps13aQ5H8C4 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.98■■■□□ 2.07
Vps13aQ5H8C4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
Vps13aQ5H8C4 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Vps13aQ5H8C4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Vps13aQ5H8C4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
Vps13aQ5H8C4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
Vps13aQ5H8C4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
Vps13aQ5H8C4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Vps13aQ5H8C4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
Vps13aQ5H8C4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
Vps13aQ5H8C4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
Vps13aQ5H8C4 Gm45855-201ENSMUST00000212546 880 ntBASIC27.91■■■□□ 2.06
Vps13aQ5H8C4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Vps13aQ5H8C4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Vps13aQ5H8C4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Vps13aQ5H8C4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Vps13aQ5H8C4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.82■■■□□ 2.04
Vps13aQ5H8C4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.81■■■□□ 2.04
Vps13aQ5H8C4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.78■■■□□ 2.04
Vps13aQ5H8C4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Vps13aQ5H8C4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Vps13aQ5H8C4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.75■■■□□ 2.03
Vps13aQ5H8C4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Vps13aQ5H8C4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
Vps13aQ5H8C4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.7■■■□□ 2.03
Vps13aQ5H8C4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.7■■■□□ 2.02
Vps13aQ5H8C4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
Vps13aQ5H8C4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Vps13aQ5H8C4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Vps13aQ5H8C4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Vps13aQ5H8C4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC27.65■■■□□ 2.02
Vps13aQ5H8C4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
Vps13aQ5H8C4 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Vps13aQ5H8C4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Vps13aQ5H8C4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Vps13aQ5H8C4 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC27.58■■■□□ 2.01
Vps13aQ5H8C4 AL845457.1-201ENSMUST00000197244 68 ntBASIC27.57■■■□□ 2
Vps13aQ5H8C4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Vps13aQ5H8C4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Vps13aQ5H8C4 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Vps13aQ5H8C4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.56■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 9.9 ms