Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Rnf180Q3U827 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC35.22■■■■□ 3.23
Rnf180Q3U827 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Rnf180Q3U827 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.13■■■■□ 3.21
Rnf180Q3U827 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC35.12■■■■□ 3.21
Rnf180Q3U827 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
Rnf180Q3U827 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC35.08■■■■□ 3.21
Rnf180Q3U827 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC35.05■■■■□ 3.2
Rnf180Q3U827 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
Rnf180Q3U827 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
Rnf180Q3U827 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
Rnf180Q3U827 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
Rnf180Q3U827 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
Rnf180Q3U827 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC34.83■■■■□ 3.17
Rnf180Q3U827 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Rnf180Q3U827 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
Rnf180Q3U827 Gm5987-201ENSMUST00000196433 1151 ntBASIC34.76■■■■□ 3.16
Rnf180Q3U827 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC34.75■■■■□ 3.15
Rnf180Q3U827 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC34.73■■■■□ 3.15
Rnf180Q3U827 Tdp2-203ENSMUST00000223804 1136 ntBASIC34.72■■■■□ 3.15
Rnf180Q3U827 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC34.72■■■■□ 3.15
Rnf180Q3U827 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.67■■■■□ 3.14
Rnf180Q3U827 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
Rnf180Q3U827 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC34.6■■■■□ 3.13
Rnf180Q3U827 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC34.59■■■■□ 3.13
Rnf180Q3U827 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC34.56■■■■□ 3.12
Rnf180Q3U827 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
Rnf180Q3U827 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
Rnf180Q3U827 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34.52■■■■□ 3.12
Rnf180Q3U827 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC34.52■■■■□ 3.12
Rnf180Q3U827 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
Rnf180Q3U827 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34.5■■■■□ 3.11
Rnf180Q3U827 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
Rnf180Q3U827 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
Rnf180Q3U827 Gm16148-201ENSMUST00000119653 893 ntBASIC34.39■■■■□ 3.1
Rnf180Q3U827 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
Rnf180Q3U827 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC34.34■■■■□ 3.09
Rnf180Q3U827 AC166822.3-201ENSMUST00000227394 661 ntBASIC34.34■■■■□ 3.09
Rnf180Q3U827 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC34.3■■■■□ 3.08
Rnf180Q3U827 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.28■■■■□ 3.08
Rnf180Q3U827 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.28■■■■□ 3.08
Rnf180Q3U827 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
Rnf180Q3U827 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC34.26■■■■□ 3.07
Rnf180Q3U827 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC34.21■■■■□ 3.07
Rnf180Q3U827 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC34.21■■■■□ 3.07
Rnf180Q3U827 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC34.19■■■■□ 3.06
Rnf180Q3U827 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC34.18■■■■□ 3.06
Rnf180Q3U827 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
Rnf180Q3U827 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
Rnf180Q3U827 Gm45855-201ENSMUST00000212546 880 ntBASIC34.14■■■■□ 3.06
Rnf180Q3U827 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC34.11■■■■□ 3.05
Rnf180Q3U827 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.11■■■■□ 3.05
Rnf180Q3U827 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC34.09■■■■□ 3.05
Rnf180Q3U827 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC34.07■■■■□ 3.04
Rnf180Q3U827 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC34.04■■■■□ 3.04
Rnf180Q3U827 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC34.03■■■■□ 3.04
Rnf180Q3U827 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC34.02■■■■□ 3.04
Rnf180Q3U827 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC33.98■■■■□ 3.03
Rnf180Q3U827 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
Rnf180Q3U827 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
Rnf180Q3U827 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC33.95■■■■□ 3.03
Rnf180Q3U827 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC33.95■■■■□ 3.03
Rnf180Q3U827 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
Rnf180Q3U827 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC33.9■■■■□ 3.02
Rnf180Q3U827 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Rnf180Q3U827 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Rnf180Q3U827 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
Rnf180Q3U827 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.84■■■■□ 3.01
Rnf180Q3U827 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC33.83■■■■□ 3.01
Rnf180Q3U827 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
Rnf180Q3U827 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC33.83■■■■□ 3.01
Rnf180Q3U827 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC33.82■■■■□ 3
Rnf180Q3U827 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC33.79■■■■□ 3
Rnf180Q3U827 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
Rnf180Q3U827 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
Rnf180Q3U827 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
Rnf180Q3U827 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Rnf180Q3U827 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC33.7■■■□□ 2.99
Rnf180Q3U827 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Rnf180Q3U827 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC33.65■■■□□ 2.98
Rnf180Q3U827 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Rnf180Q3U827 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
Rnf180Q3U827 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC33.62■■■□□ 2.97
Rnf180Q3U827 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Rnf180Q3U827 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Rnf180Q3U827 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC33.61■■■□□ 2.97
Rnf180Q3U827 AL845457.1-201ENSMUST00000197244 68 ntBASIC33.6■■■□□ 2.97
Rnf180Q3U827 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33.59■■■□□ 2.97
Rnf180Q3U827 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC33.57■■■□□ 2.96
Rnf180Q3U827 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC33.56■■■□□ 2.96
Rnf180Q3U827 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
Rnf180Q3U827 Gm9397-201ENSMUST00000200125 605 ntBASIC33.5■■■□□ 2.95
Rnf180Q3U827 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC33.48■■■□□ 2.95
Rnf180Q3U827 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC33.48■■■□□ 2.95
Rnf180Q3U827 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC33.46■■■□□ 2.95
Rnf180Q3U827 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
Rnf180Q3U827 Peli2-204ENSMUST00000226513 1320 ntBASIC33.45■■■□□ 2.95
Rnf180Q3U827 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC33.44■■■□□ 2.94
Rnf180Q3U827 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Rnf180Q3U827 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms