Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
Ddb1Q3U1J4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
Ddb1Q3U1J4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC36.94■■■■□ 3.5
Ddb1Q3U1J4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
Ddb1Q3U1J4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC36.85■■■■□ 3.49
Ddb1Q3U1J4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
Ddb1Q3U1J4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC36.79■■■■□ 3.48
Ddb1Q3U1J4 Zfp131-205ENSMUST00000223812 663 ntBASIC36.77■■■■□ 3.48
Ddb1Q3U1J4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC36.76■■■■□ 3.48
Ddb1Q3U1J4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
Ddb1Q3U1J4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
Ddb1Q3U1J4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
Ddb1Q3U1J4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
Ddb1Q3U1J4 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
Ddb1Q3U1J4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC36.6■■■■□ 3.45
Ddb1Q3U1J4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
Ddb1Q3U1J4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
Ddb1Q3U1J4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC36.58■■■■□ 3.45
Ddb1Q3U1J4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC36.56■■■■□ 3.44
Ddb1Q3U1J4 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
Ddb1Q3U1J4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC36.49■■■■□ 3.43
Ddb1Q3U1J4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
Ddb1Q3U1J4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC36.44■■■■□ 3.42
Ddb1Q3U1J4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC36.44■■■■□ 3.42
Ddb1Q3U1J4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
Ddb1Q3U1J4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC36.35■■■■□ 3.41
Ddb1Q3U1J4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
Ddb1Q3U1J4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
Ddb1Q3U1J4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC36.26■■■■□ 3.4
Ddb1Q3U1J4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
Ddb1Q3U1J4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC36.25■■■■□ 3.39
Ddb1Q3U1J4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Ddb1Q3U1J4 Gm42596-201ENSMUST00000196305 1958 ntBASIC36.22■■■■□ 3.39
Ddb1Q3U1J4 AC166822.3-201ENSMUST00000227394 661 ntBASIC36.21■■■■□ 3.39
Ddb1Q3U1J4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC36.21■■■■□ 3.39
Ddb1Q3U1J4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Ddb1Q3U1J4 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC36.19■■■■□ 3.38
Ddb1Q3U1J4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC36.17■■■■□ 3.38
Ddb1Q3U1J4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
Ddb1Q3U1J4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC36.15■■■■□ 3.38
Ddb1Q3U1J4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC36.11■■■■□ 3.37
Ddb1Q3U1J4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
Ddb1Q3U1J4 Gm10524-201ENSMUST00000181931 1893 ntBASIC36.1■■■■□ 3.37
Ddb1Q3U1J4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC36.03■■■■□ 3.36
Ddb1Q3U1J4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
Ddb1Q3U1J4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
Ddb1Q3U1J4 AL845457.1-201ENSMUST00000197244 68 ntBASIC35.91■■■■□ 3.34
Ddb1Q3U1J4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC35.9■■■■□ 3.34
Ddb1Q3U1J4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Ddb1Q3U1J4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Ddb1Q3U1J4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
Ddb1Q3U1J4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
Ddb1Q3U1J4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC35.8■■■■□ 3.32
Ddb1Q3U1J4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
Ddb1Q3U1J4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
Ddb1Q3U1J4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
Ddb1Q3U1J4 Gm16148-201ENSMUST00000119653 893 ntBASIC35.76■■■■□ 3.32
Ddb1Q3U1J4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC35.75■■■■□ 3.31
Ddb1Q3U1J4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC35.74■■■■□ 3.31
Ddb1Q3U1J4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC35.74■■■■□ 3.31
Ddb1Q3U1J4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Ddb1Q3U1J4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
Ddb1Q3U1J4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35.66■■■■□ 3.3
Ddb1Q3U1J4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC35.65■■■■□ 3.3
Ddb1Q3U1J4 Tdp2-203ENSMUST00000223804 1136 ntBASIC35.64■■■■□ 3.3
Ddb1Q3U1J4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC35.63■■■■□ 3.29
Ddb1Q3U1J4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC35.59■■■■□ 3.29
Ddb1Q3U1J4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
Ddb1Q3U1J4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
Ddb1Q3U1J4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC35.54■■■■□ 3.28
Ddb1Q3U1J4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Ddb1Q3U1J4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC35.52■■■■□ 3.28
Ddb1Q3U1J4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC35.51■■■■□ 3.27
Ddb1Q3U1J4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
Ddb1Q3U1J4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
Ddb1Q3U1J4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC35.42■■■■□ 3.26
Ddb1Q3U1J4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC35.38■■■■□ 3.25
Ddb1Q3U1J4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC35.37■■■■□ 3.25
Ddb1Q3U1J4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Ddb1Q3U1J4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC35.34■■■■□ 3.25
Ddb1Q3U1J4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC35.34■■■■□ 3.25
Ddb1Q3U1J4 Peli2-204ENSMUST00000226513 1320 ntBASIC35.33■■■■□ 3.25
Ddb1Q3U1J4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
Ddb1Q3U1J4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC35.33■■■■□ 3.25
Ddb1Q3U1J4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC35.3■■■■□ 3.24
Ddb1Q3U1J4 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
Ddb1Q3U1J4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC35.28■■■■□ 3.24
Ddb1Q3U1J4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC35.27■■■■□ 3.24
Ddb1Q3U1J4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC35.24■■■■□ 3.23
Ddb1Q3U1J4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Ddb1Q3U1J4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Ddb1Q3U1J4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Ddb1Q3U1J4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Ddb1Q3U1J4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC35.2■■■■□ 3.22
Ddb1Q3U1J4 Gm45855-201ENSMUST00000212546 880 ntBASIC35.19■■■■□ 3.22
Ddb1Q3U1J4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Ddb1Q3U1J4 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Ddb1Q3U1J4 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC35.16■■■■□ 3.22
Ddb1Q3U1J4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC35.13■■■■□ 3.21
Ddb1Q3U1J4 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC35.09■■■■□ 3.21
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms