Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
Msh6P54276 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36.44■■■■□ 3.42
Msh6P54276 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC36.43■■■■□ 3.42
Msh6P54276 CT025624.2-201ENSMUST00000223609 1909 ntBASIC36.43■■■■□ 3.42
Msh6P54276 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
Msh6P54276 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC36.3■■■■□ 3.4
Msh6P54276 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC36.24■■■■□ 3.39
Msh6P54276 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36.22■■■■□ 3.39
Msh6P54276 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
Msh6P54276 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC36.19■■■■□ 3.38
Msh6P54276 Gm24804-201ENSMUST00000174982 85 ntBASIC36.17■■■■□ 3.38
Msh6P54276 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
Msh6P54276 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
Msh6P54276 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC36.09■■■■□ 3.37
Msh6P54276 Gm27322-201ENSMUST00000184007 104 ntBASIC36.04■■■■□ 3.36
Msh6P54276 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC36.03■■■■□ 3.36
Msh6P54276 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC36■■■■□ 3.35
Msh6P54276 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC35.93■■■■□ 3.34
Msh6P54276 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35.9■■■■□ 3.34
Msh6P54276 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC35.88■■■■□ 3.33
Msh6P54276 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
Msh6P54276 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
Msh6P54276 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
Msh6P54276 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
Msh6P54276 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
Msh6P54276 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC35.79■■■■□ 3.32
Msh6P54276 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
Msh6P54276 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC35.76■■■■□ 3.31
Msh6P54276 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Msh6P54276 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Msh6P54276 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
Msh6P54276 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC35.6■■■■□ 3.29
Msh6P54276 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.29
Msh6P54276 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC35.52■■■■□ 3.28
Msh6P54276 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35.5■■■■□ 3.27
Msh6P54276 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC35.45■■■■□ 3.27
Msh6P54276 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Msh6P54276 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Msh6P54276 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC35.43■■■■□ 3.26
Msh6P54276 Zfp131-205ENSMUST00000223812 663 ntBASIC35.4■■■■□ 3.26
Msh6P54276 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC35.35■■■■□ 3.25
Msh6P54276 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
Msh6P54276 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
Msh6P54276 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Msh6P54276 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC35.29■■■■□ 3.24
Msh6P54276 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC35.29■■■■□ 3.24
Msh6P54276 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC35.29■■■■□ 3.24
Msh6P54276 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC35.27■■■■□ 3.24
Msh6P54276 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
Msh6P54276 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Msh6P54276 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Msh6P54276 AC166822.3-201ENSMUST00000227394 661 ntBASIC35.16■■■■□ 3.22
Msh6P54276 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Msh6P54276 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC35.16■■■■□ 3.22
Msh6P54276 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
Msh6P54276 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
Msh6P54276 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
Msh6P54276 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC35.11■■■■□ 3.21
Msh6P54276 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Msh6P54276 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Msh6P54276 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
Msh6P54276 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC35■■■■□ 3.19
Msh6P54276 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
Msh6P54276 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC34.99■■■■□ 3.19
Msh6P54276 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC34.96■■■■□ 3.19
Msh6P54276 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.19
Msh6P54276 AL845457.1-201ENSMUST00000197244 68 ntBASIC34.94■■■■□ 3.18
Msh6P54276 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
Msh6P54276 Zfp131-207ENSMUST00000224946 1783 ntBASIC34.9■■■■□ 3.18
Msh6P54276 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC34.89■■■■□ 3.18
Msh6P54276 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
Msh6P54276 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
Msh6P54276 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC34.83■■■■□ 3.17
Msh6P54276 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
Msh6P54276 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
Msh6P54276 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
Msh6P54276 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC34.79■■■■□ 3.16
Msh6P54276 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
Msh6P54276 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
Msh6P54276 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
Msh6P54276 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34.73■■■■□ 3.15
Msh6P54276 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC34.73■■■■□ 3.15
Msh6P54276 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Msh6P54276 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Msh6P54276 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
Msh6P54276 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Msh6P54276 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Msh6P54276 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC34.62■■■■□ 3.13
Msh6P54276 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
Msh6P54276 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
Msh6P54276 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC34.51■■■■□ 3.12
Msh6P54276 Gm16148-201ENSMUST00000119653 893 ntBASIC34.51■■■■□ 3.12
Msh6P54276 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC34.41■■■■□ 3.1
Msh6P54276 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC34.36■■■■□ 3.09
Msh6P54276 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC34.36■■■■□ 3.09
Msh6P54276 Tdp2-203ENSMUST00000223804 1136 ntBASIC34.35■■■■□ 3.09
Msh6P54276 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
Msh6P54276 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
Msh6P54276 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC34.33■■■■□ 3.09
Msh6P54276 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms