Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 YBR220CYBR220C 1683 nt12.85□□□□□ -0.35
YNL040WP53960 CAC2YML102W 1407 nt12.79□□□□□ -0.36
YNL040WP53960 YDL221WYDL221W 552 nt12.74□□□□□ -0.37
YNL040WP53960 YMR090WYMR090W 684 nt12.74□□□□□ -0.37
YNL040WP53960 YLR281CYLR281C 468 nt12.73□□□□□ -0.37
YNL040WP53960 YLR154C-GYLR154C-G 150 nt12.72□□□□□ -0.37
YNL040WP53960 ART5YGR068C 1761 nt12.71□□□□□ -0.38
YNL040WP53960 WHI5YOR083W 888 nt12.7□□□□□ -0.38
YNL040WP53960 SDH1YKL148C 1923 nt12.69□□□□□ -0.38
YNL040WP53960 TIR4YOR009W 1464 nt12.67□□□□□ -0.38
YNL040WP53960 GFD2YCL036W 1701 nt12.67□□□□□ -0.38
YNL040WP53960 PET9YBL030C 957 nt12.64□□□□□ -0.39
YNL040WP53960 tM(CAU)CtM(CAU)C 72 nt12.62□□□□□ -0.39
YNL040WP53960 IMT4tM(CAU)E 72 nt12.62□□□□□ -0.39
YNL040WP53960 IMT3tM(CAU)J3 72 nt12.62□□□□□ -0.39
YNL040WP53960 IMT1tM(CAU)O1 72 nt12.62□□□□□ -0.39
YNL040WP53960 IMT2tM(CAU)P 72 nt12.62□□□□□ -0.39
YNL040WP53960 YCH1YGR203W 447 nt12.61□□□□□ -0.39
YNL040WP53960 YJL152WYJL152W 360 nt12.61□□□□□ -0.39
YNL040WP53960 IRC15YPL017C 1500 nt12.59□□□□□ -0.39
YNL040WP53960 PUS2YGL063W 1113 nt12.57□□□□□ -0.4
YNL040WP53960 YMR057CYMR057C 372 nt12.54□□□□□ -0.4
YNL040WP53960 SCC4YER147C 1875 nt12.53□□□□□ -0.4
YNL040WP53960 RTS2YOR077W 699 nt12.52□□□□□ -0.41
YNL040WP53960 GIS3YLR094C 1509 nt12.5□□□□□ -0.41
YNL040WP53960 PCH2YBR186W 1695 nt12.45□□□□□ -0.42
YNL040WP53960 DSK2YMR276W 1122 nt12.42□□□□□ -0.42
YNL040WP53960 GUT2YIL155C 1950 nt12.41□□□□□ -0.42
YNL040WP53960 PAC11YDR488C 1602 nt12.4□□□□□ -0.42
YNL040WP53960 IMP2'YIL154C 1041 nt12.4□□□□□ -0.42
YNL040WP53960 CUE1YMR264W 612 nt12.4□□□□□ -0.42
YNL040WP53960 FPS1YLL043W 2010 nt12.4□□□□□ -0.42
YNL040WP53960 YLR236CYLR236C 324 nt12.39□□□□□ -0.43
YNL040WP53960 YPR011CYPR011C 981 nt12.39□□□□□ -0.43
YNL040WP53960 YCL048W-AYCL048W-A 240 nt12.39□□□□□ -0.43
YNL040WP53960 IDH1YNL037C 1083 nt12.37□□□□□ -0.43
YNL040WP53960 SEC11YIR022W 504 nt12.35□□□□□ -0.43
YNL040WP53960 YSC84YHR016C 1407 nt12.33□□□□□ -0.44
YNL040WP53960 GBP2YCL011C 1284 nt12.29□□□□□ -0.44
YNL040WP53960 YHL050CYHL050C 2094 nt12.28□□□□□ -0.44
YNL040WP53960 PIB2YGL023C 1908 nt12.27□□□□□ -0.45
YNL040WP53960 FMP45YDL222C 930 nt12.25□□□□□ -0.45
YNL040WP53960 YIL100WYIL100W 354 nt12.24□□□□□ -0.45
YNL040WP53960 RRT12YCR045C 1476 nt12.23□□□□□ -0.45
YNL040WP53960 YDR433WYDR433W 441 nt12.2□□□□□ -0.46
YNL040WP53960 LPX1YOR084W 1164 nt12.18□□□□□ -0.46
YNL040WP53960 RRD1YIL153W 1182 nt12.17□□□□□ -0.46
YNL040WP53960 ERV46YAL042W 1248 nt12.17□□□□□ -0.46
YNL040WP53960 TCD2YKL027W 1344 nt12.15□□□□□ -0.46
YNL040WP53960 DED1YOR204W 1815 nt12.14□□□□□ -0.47
YNL040WP53960 MXR2YCL033C 507 nt12.13□□□□□ -0.47
YNL040WP53960 RTF1YGL244W 1677 nt12.1□□□□□ -0.47
YNL040WP53960 YKR040CYKR040C 504 nt12.09□□□□□ -0.47
YNL040WP53960 YNL195CYNL195C 786 nt12.09□□□□□ -0.47
YNL040WP53960 MOT3YMR070W 1473 nt12.07□□□□□ -0.48
YNL040WP53960 FMT1YBL013W 1206 nt12.04□□□□□ -0.48
YNL040WP53960 FMP52YER004W 696 nt12.01□□□□□ -0.49
YNL040WP53960 PTK1YKL198C 1989 nt11.99□□□□□ -0.49
YNL040WP53960 BOP3YNL042W 1191 nt11.98□□□□□ -0.49
YNL040WP53960 FRD1YEL047C 1413 nt11.94□□□□□ -0.5
YNL040WP53960 NVJ2YPR091C 2313 nt11.93□□□□□ -0.5
YNL040WP53960 SOR2YDL246C 1074 nt11.92□□□□□ -0.5
YNL040WP53960 SOR1YJR159W 1074 nt11.92□□□□□ -0.5
YNL040WP53960 SPP1YPL138C 1062 nt11.92□□□□□ -0.5
YNL040WP53960 YCL042WYCL042W 360 nt11.91□□□□□ -0.5
YNL040WP53960 CWP1YKL096W 720 nt11.9□□□□□ -0.5
YNL040WP53960 ADH2YMR303C 1047 nt11.9□□□□□ -0.5
YNL040WP53960 PCM1YEL058W 1674 nt11.89□□□□□ -0.51
YNL040WP53960 NCP1YHR042W 2076 nt11.89□□□□□ -0.51
YNL040WP53960 SNF6YHL025W 999 nt11.81□□□□□ -0.52
YNL040WP53960 LCB1YMR296C 1677 nt11.76□□□□□ -0.53
YNL040WP53960 SIM1YIL123W 1431 nt11.73□□□□□ -0.53
YNL040WP53960 YFL054CYFL054C 1941 nt11.71□□□□□ -0.53
YNL040WP53960 PTH1YHR189W 573 nt11.71□□□□□ -0.53
YNL040WP53960 YIH1YCR059C 777 nt11.69□□□□□ -0.54
YNL040WP53960 BIO4YNR057C 714 nt11.69□□□□□ -0.54
YNL040WP53960 RNQ1YCL028W 1218 nt11.68□□□□□ -0.54
YNL040WP53960 YLR235CYLR235C 399 nt11.65□□□□□ -0.54
YNL040WP53960 DIC1YLR348C 897 nt11.65□□□□□ -0.54
YNL040WP53960 RTG1YOL067C 534 nt11.65□□□□□ -0.54
YNL040WP53960 SPT8YLR055C 1809 nt11.63□□□□□ -0.55
YNL040WP53960 YLL053CYLL053C 459 nt11.61□□□□□ -0.55
YNL040WP53960 YKL030WYKL030W 606 nt11.57□□□□□ -0.56
YNL040WP53960 YEL076C-AYEL076C-A 651 nt11.56□□□□□ -0.56
YNL040WP53960 YEL076CYEL076C 651 nt11.56□□□□□ -0.56
YNL040WP53960 MRPL8YJL063C 717 nt11.56□□□□□ -0.56
YNL040WP53960 YLR464WYLR464W 651 nt11.56□□□□□ -0.56
YNL040WP53960 TIM23YNR017W 669 nt11.53□□□□□ -0.56
YNL040WP53960 LYS4YDR234W 2082 nt11.52□□□□□ -0.57
YNL040WP53960 FTR1YER145C 1215 nt11.52□□□□□ -0.57
YNL040WP53960 ERF2YLR246W 1080 nt11.51□□□□□ -0.57
YNL040WP53960 GAL1YBR020W 1587 nt11.49□□□□□ -0.57
YNL040WP53960 YLR179CYLR179C 606 nt11.48□□□□□ -0.57
YNL040WP53960 CRR1YLR213C 1269 nt11.48□□□□□ -0.57
YNL040WP53960 ATF2YGR177C 1608 nt11.47□□□□□ -0.57
YNL040WP53960 TRM5YHR070W 1500 nt11.45□□□□□ -0.58
YNL040WP53960 ADO1YJR105W 1023 nt11.45□□□□□ -0.58
YNL040WP53960 SWE1YJL187C 2460 nt11.44□□□□□ -0.58
YNL040WP53960 BOR1YNL275W 1731 nt11.43□□□□□ -0.58
YNL040WP53960 HUA1YGR268C 597 nt11.42□□□□□ -0.58
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms