Protein–RNA interactions for Protein: P41233

Abca1, ATP-binding cassette sub-family A member 1, mousemouse

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca1P41233 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23■■□□□ 1.27
Abca1P41233 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23■■□□□ 1.27
Abca1P41233 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Abca1P41233 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Abca1P41233 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Abca1P41233 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Abca1P41233 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Abca1P41233 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Abca1P41233 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
Abca1P41233 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Abca1P41233 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Abca1P41233 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Abca1P41233 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.83■■□□□ 1.24
Abca1P41233 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Abca1P41233 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Abca1P41233 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Abca1P41233 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.75■■□□□ 1.23
Abca1P41233 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Abca1P41233 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Abca1P41233 Zfp131-205ENSMUST00000223812 663 ntBASIC22.73■■□□□ 1.23
Abca1P41233 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Abca1P41233 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Abca1P41233 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Abca1P41233 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Abca1P41233 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.65■■□□□ 1.22
Abca1P41233 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Abca1P41233 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Abca1P41233 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Abca1P41233 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.58■■□□□ 1.21
Abca1P41233 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.56■■□□□ 1.2
Abca1P41233 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Abca1P41233 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Abca1P41233 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Abca1P41233 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Abca1P41233 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Abca1P41233 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Abca1P41233 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Abca1P41233 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.47■■□□□ 1.19
Abca1P41233 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Abca1P41233 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Abca1P41233 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Abca1P41233 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Abca1P41233 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC22.46■■□□□ 1.19
Abca1P41233 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Abca1P41233 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Abca1P41233 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.42■■□□□ 1.18
Abca1P41233 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Abca1P41233 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Abca1P41233 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Abca1P41233 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC22.39■■□□□ 1.17
Abca1P41233 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC22.38■■□□□ 1.17
Abca1P41233 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Abca1P41233 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Abca1P41233 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Abca1P41233 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Abca1P41233 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Abca1P41233 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Abca1P41233 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.27■■□□□ 1.16
Abca1P41233 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Abca1P41233 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Abca1P41233 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
Abca1P41233 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Abca1P41233 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Abca1P41233 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Abca1P41233 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Abca1P41233 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Abca1P41233 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.17■■□□□ 1.14
Abca1P41233 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Abca1P41233 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Abca1P41233 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC22.13■■□□□ 1.13
Abca1P41233 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.12■■□□□ 1.13
Abca1P41233 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Abca1P41233 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.1■■□□□ 1.13
Abca1P41233 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Abca1P41233 Gm16148-201ENSMUST00000119653 893 ntBASIC22.08■■□□□ 1.12
Abca1P41233 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Abca1P41233 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Abca1P41233 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Abca1P41233 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Abca1P41233 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Abca1P41233 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Abca1P41233 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Abca1P41233 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Abca1P41233 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Abca1P41233 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Abca1P41233 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Abca1P41233 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Abca1P41233 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Abca1P41233 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.94■■□□□ 1.1
Abca1P41233 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.94■■□□□ 1.1
Abca1P41233 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC21.92■■□□□ 1.1
Abca1P41233 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Abca1P41233 Peli2-204ENSMUST00000226513 1320 ntBASIC21.9■■□□□ 1.1
Abca1P41233 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Abca1P41233 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Abca1P41233 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Abca1P41233 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Abca1P41233 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Abca1P41233 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.86■■□□□ 1.09
Abca1P41233 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms