Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.59■■■□□ 2.01
Pdlim1O70400 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.57■■■□□ 2
Pdlim1O70400 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.54■■■□□ 2
Pdlim1O70400 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
Pdlim1O70400 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
Pdlim1O70400 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Pdlim1O70400 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.5■■□□□ 1.99
Pdlim1O70400 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Pdlim1O70400 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
Pdlim1O70400 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.46■■□□□ 1.99
Pdlim1O70400 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.98
Pdlim1O70400 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Pdlim1O70400 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Pdlim1O70400 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC27.41■■□□□ 1.98
Pdlim1O70400 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Pdlim1O70400 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Pdlim1O70400 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Pdlim1O70400 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.3■■□□□ 1.96
Pdlim1O70400 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Pdlim1O70400 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Pdlim1O70400 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Pdlim1O70400 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Pdlim1O70400 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Pdlim1O70400 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC27.14■■□□□ 1.94
Pdlim1O70400 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.14■■□□□ 1.93
Pdlim1O70400 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Pdlim1O70400 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
Pdlim1O70400 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
Pdlim1O70400 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Pdlim1O70400 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.09■■□□□ 1.93
Pdlim1O70400 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Pdlim1O70400 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC27.04■■□□□ 1.92
Pdlim1O70400 Zfp131-207ENSMUST00000224946 1783 ntBASIC27.03■■□□□ 1.92
Pdlim1O70400 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Pdlim1O70400 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Pdlim1O70400 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC26.94■■□□□ 1.9
Pdlim1O70400 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Pdlim1O70400 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Pdlim1O70400 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Pdlim1O70400 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Pdlim1O70400 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Pdlim1O70400 Gm26115-201ENSMUST00000175605 87 ntBASIC26.88■■□□□ 1.89
Pdlim1O70400 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.86■■□□□ 1.89
Pdlim1O70400 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Pdlim1O70400 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Pdlim1O70400 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Pdlim1O70400 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Pdlim1O70400 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pdlim1O70400 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Pdlim1O70400 Gm27322-201ENSMUST00000184007 104 ntBASIC26.76■■□□□ 1.87
Pdlim1O70400 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.76■■□□□ 1.87
Pdlim1O70400 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Pdlim1O70400 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Pdlim1O70400 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
Pdlim1O70400 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Pdlim1O70400 Gm8109-201ENSMUST00000194076 746 ntBASIC26.73■■□□□ 1.87
Pdlim1O70400 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Pdlim1O70400 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Pdlim1O70400 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Pdlim1O70400 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Pdlim1O70400 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.72■■□□□ 1.87
Pdlim1O70400 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Pdlim1O70400 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Pdlim1O70400 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC26.7■■□□□ 1.86
Pdlim1O70400 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Pdlim1O70400 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Pdlim1O70400 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Pdlim1O70400 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pdlim1O70400 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Pdlim1O70400 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Pdlim1O70400 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Pdlim1O70400 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.52■■□□□ 1.84
Pdlim1O70400 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Pdlim1O70400 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.49■■□□□ 1.83
Pdlim1O70400 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pdlim1O70400 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
Pdlim1O70400 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
Pdlim1O70400 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Pdlim1O70400 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Pdlim1O70400 Mipep-204ENSMUST00000225043 1548 ntBASIC26.4■■□□□ 1.82
Pdlim1O70400 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Pdlim1O70400 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Pdlim1O70400 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Pdlim1O70400 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Pdlim1O70400 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Pdlim1O70400 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pdlim1O70400 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pdlim1O70400 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pdlim1O70400 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pdlim1O70400 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pdlim1O70400 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pdlim1O70400 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Pdlim1O70400 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.2■■□□□ 1.79
Pdlim1O70400 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Pdlim1O70400 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pdlim1O70400 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Pdlim1O70400 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pdlim1O70400 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pdlim1O70400 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26.1■■□□□ 1.77
Pdlim1O70400 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.1■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms