Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Abca4O35600 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Abca4O35600 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.77■■■□□ 2.04
Abca4O35600 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Abca4O35600 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Abca4O35600 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC27.7■■■□□ 2.02
Abca4O35600 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC27.66■■■□□ 2.02
Abca4O35600 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.65■■■□□ 2.02
Abca4O35600 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Abca4O35600 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.58■■■□□ 2.01
Abca4O35600 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.56■■■□□ 2
Abca4O35600 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.55■■■□□ 2
Abca4O35600 Gm5987-201ENSMUST00000196433 1151 ntBASIC27.55■■■□□ 2
Abca4O35600 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.53■■■□□ 2
Abca4O35600 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC27.53■■■□□ 2
Abca4O35600 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Abca4O35600 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC27.49■■□□□ 1.99
Abca4O35600 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Abca4O35600 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC27.47■■□□□ 1.99
Abca4O35600 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Abca4O35600 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Abca4O35600 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
Abca4O35600 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.44■■□□□ 1.98
Abca4O35600 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Abca4O35600 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Abca4O35600 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Abca4O35600 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Abca4O35600 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.32■■□□□ 1.96
Abca4O35600 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Abca4O35600 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
Abca4O35600 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
Abca4O35600 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.27■■□□□ 1.96
Abca4O35600 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC27.26■■□□□ 1.95
Abca4O35600 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
Abca4O35600 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
Abca4O35600 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Abca4O35600 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
Abca4O35600 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
Abca4O35600 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.13■■□□□ 1.93
Abca4O35600 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
Abca4O35600 AC166822.3-201ENSMUST00000227394 661 ntBASIC27.07■■□□□ 1.92
Abca4O35600 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Abca4O35600 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Abca4O35600 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Abca4O35600 Gm16148-201ENSMUST00000119653 893 ntBASIC27.02■■□□□ 1.92
Abca4O35600 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Abca4O35600 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Abca4O35600 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
Abca4O35600 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Abca4O35600 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Abca4O35600 Gm45855-201ENSMUST00000212546 880 ntBASIC26.95■■□□□ 1.91
Abca4O35600 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Abca4O35600 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Abca4O35600 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Abca4O35600 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Abca4O35600 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
Abca4O35600 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Abca4O35600 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.85■■□□□ 1.89
Abca4O35600 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Abca4O35600 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Abca4O35600 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.8■■□□□ 1.88
Abca4O35600 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Abca4O35600 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.78■■□□□ 1.88
Abca4O35600 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Abca4O35600 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.77■■□□□ 1.88
Abca4O35600 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Abca4O35600 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Abca4O35600 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC26.76■■□□□ 1.87
Abca4O35600 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
Abca4O35600 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
Abca4O35600 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.71■■□□□ 1.87
Abca4O35600 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Abca4O35600 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Abca4O35600 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Abca4O35600 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Abca4O35600 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Abca4O35600 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Abca4O35600 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Abca4O35600 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Abca4O35600 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Abca4O35600 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Abca4O35600 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Abca4O35600 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Abca4O35600 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Abca4O35600 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Abca4O35600 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Abca4O35600 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
Abca4O35600 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Abca4O35600 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Abca4O35600 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Abca4O35600 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Abca4O35600 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC26.49■■□□□ 1.83
Abca4O35600 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Abca4O35600 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
Abca4O35600 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Abca4O35600 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.47■■□□□ 1.83
Abca4O35600 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Abca4O35600 Peli2-204ENSMUST00000226513 1320 ntBASIC26.45■■□□□ 1.82
Abca4O35600 Psd-208ENSMUST00000224556 2034 ntBASIC26.41■■□□□ 1.82
Abca4O35600 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms