Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.37■■□□□ 1.17
Col6a5A6H584 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC22.3■■□□□ 1.16
Col6a5A6H584 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Col6a5A6H584 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC22.27■■□□□ 1.16
Col6a5A6H584 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Col6a5A6H584 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col6a5A6H584 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC22.26■■□□□ 1.15
Col6a5A6H584 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col6a5A6H584 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.17■■□□□ 1.14
Col6a5A6H584 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col6a5A6H584 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col6a5A6H584 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22.14■■□□□ 1.14
Col6a5A6H584 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Col6a5A6H584 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Col6a5A6H584 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.1■■□□□ 1.13
Col6a5A6H584 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22.09■■□□□ 1.13
Col6a5A6H584 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.08■■□□□ 1.13
Col6a5A6H584 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC22.07■■□□□ 1.12
Col6a5A6H584 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.06■■□□□ 1.12
Col6a5A6H584 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
Col6a5A6H584 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Col6a5A6H584 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.02■■□□□ 1.12
Col6a5A6H584 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col6a5A6H584 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col6a5A6H584 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.99■■□□□ 1.11
Col6a5A6H584 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Col6a5A6H584 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Col6a5A6H584 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col6a5A6H584 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col6a5A6H584 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
Col6a5A6H584 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Col6a5A6H584 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col6a5A6H584 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col6a5A6H584 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.86■■□□□ 1.09
Col6a5A6H584 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a5A6H584 AC166822.3-201ENSMUST00000227394 661 ntBASIC21.84■■□□□ 1.09
Col6a5A6H584 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col6a5A6H584 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Col6a5A6H584 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Col6a5A6H584 Gm16148-201ENSMUST00000119653 893 ntBASIC21.78■■□□□ 1.08
Col6a5A6H584 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Col6a5A6H584 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a5A6H584 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Col6a5A6H584 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col6a5A6H584 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.71■■□□□ 1.07
Col6a5A6H584 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a5A6H584 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col6a5A6H584 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Col6a5A6H584 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a5A6H584 Gm45855-201ENSMUST00000212546 880 ntBASIC21.66■■□□□ 1.06
Col6a5A6H584 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a5A6H584 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a5A6H584 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a5A6H584 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a5A6H584 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Col6a5A6H584 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col6a5A6H584 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Col6a5A6H584 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Col6a5A6H584 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Col6a5A6H584 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
Col6a5A6H584 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.56■■□□□ 1.04
Col6a5A6H584 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a5A6H584 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a5A6H584 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a5A6H584 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.52■■□□□ 1.04
Col6a5A6H584 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col6a5A6H584 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a5A6H584 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Col6a5A6H584 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col6a5A6H584 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col6a5A6H584 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Col6a5A6H584 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.44■■□□□ 1.02
Col6a5A6H584 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a5A6H584 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a5A6H584 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a5A6H584 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col6a5A6H584 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a5A6H584 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a5A6H584 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a5A6H584 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.38■■□□□ 1.01
Col6a5A6H584 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Col6a5A6H584 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col6a5A6H584 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a5A6H584 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a5A6H584 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a5A6H584 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col6a5A6H584 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21.31■■□□□ 1
Col6a5A6H584 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Col6a5A6H584 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col6a5A6H584 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.27■■□□□ 1
Col6a5A6H584 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a5A6H584 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Col6a5A6H584 Gm9397-201ENSMUST00000200125 605 ntBASIC21.25■□□□□ 0.99
Col6a5A6H584 Psd-208ENSMUST00000224556 2034 ntBASIC21.25■□□□□ 0.99
Col6a5A6H584 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a5A6H584 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a5A6H584 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Col6a5A6H584 Peli2-204ENSMUST00000226513 1320 ntBASIC21.18■□□□□ 0.98
Col6a5A6H584 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a5A6H584 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 93 ms