Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.35■■□□□ 1.49
Pcdhgb8A0A140LI48 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdhgb8A0A140LI48 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.34■■□□□ 1.49
Pcdhgb8A0A140LI48 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
Pcdhgb8A0A140LI48 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.3■■□□□ 1.48
Pcdhgb8A0A140LI48 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Pcdhgb8A0A140LI48 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb8A0A140LI48 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdhgb8A0A140LI48 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdhgb8A0A140LI48 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdhgb8A0A140LI48 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Pcdhgb8A0A140LI48 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdhgb8A0A140LI48 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
Pcdhgb8A0A140LI48 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdhgb8A0A140LI48 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdhgb8A0A140LI48 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.18■■□□□ 1.46
Pcdhgb8A0A140LI48 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb8A0A140LI48 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24.16■■□□□ 1.46
Pcdhgb8A0A140LI48 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdhgb8A0A140LI48 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Pcdhgb8A0A140LI48 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Pcdhgb8A0A140LI48 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Pcdhgb8A0A140LI48 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Pcdhgb8A0A140LI48 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Pcdhgb8A0A140LI48 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
Pcdhgb8A0A140LI48 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Pcdhgb8A0A140LI48 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Pcdhgb8A0A140LI48 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Pcdhgb8A0A140LI48 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC24■■□□□ 1.43
Pcdhgb8A0A140LI48 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Pcdhgb8A0A140LI48 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.95■■□□□ 1.42
Pcdhgb8A0A140LI48 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.95■■□□□ 1.42
Pcdhgb8A0A140LI48 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.95■■□□□ 1.42
Pcdhgb8A0A140LI48 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Pcdhgb8A0A140LI48 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Pcdhgb8A0A140LI48 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Pcdhgb8A0A140LI48 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Pcdhgb8A0A140LI48 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.86■■□□□ 1.41
Pcdhgb8A0A140LI48 Gm26115-201ENSMUST00000175605 87 ntBASIC23.83■■□□□ 1.41
Pcdhgb8A0A140LI48 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Pcdhgb8A0A140LI48 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Pcdhgb8A0A140LI48 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Pcdhgb8A0A140LI48 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Pcdhgb8A0A140LI48 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Pcdhgb8A0A140LI48 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgb8A0A140LI48 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgb8A0A140LI48 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdhgb8A0A140LI48 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.76■■□□□ 1.39
Pcdhgb8A0A140LI48 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdhgb8A0A140LI48 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.73■■□□□ 1.39
Pcdhgb8A0A140LI48 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdhgb8A0A140LI48 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdhgb8A0A140LI48 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgb8A0A140LI48 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
Pcdhgb8A0A140LI48 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdhgb8A0A140LI48 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pcdhgb8A0A140LI48 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
Pcdhgb8A0A140LI48 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.64■■□□□ 1.37
Pcdhgb8A0A140LI48 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.64■■□□□ 1.37
Pcdhgb8A0A140LI48 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgb8A0A140LI48 Gm8109-201ENSMUST00000194076 746 ntBASIC23.63■■□□□ 1.37
Pcdhgb8A0A140LI48 Zxda-201ENSMUST00000117281 2621 ntBASIC23.61■■□□□ 1.37
Pcdhgb8A0A140LI48 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdhgb8A0A140LI48 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdhgb8A0A140LI48 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgb8A0A140LI48 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgb8A0A140LI48 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgb8A0A140LI48 Gm17082-201ENSMUST00000166043 1091 ntBASIC23.47■■□□□ 1.35
Pcdhgb8A0A140LI48 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdhgb8A0A140LI48 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
Pcdhgb8A0A140LI48 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhgb8A0A140LI48 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhgb8A0A140LI48 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC23.43■■□□□ 1.34
Pcdhgb8A0A140LI48 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Pcdhgb8A0A140LI48 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgb8A0A140LI48 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb8A0A140LI48 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb8A0A140LI48 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhgb8A0A140LI48 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.33■■□□□ 1.33
Pcdhgb8A0A140LI48 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhgb8A0A140LI48 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Pcdhgb8A0A140LI48 Gm27322-201ENSMUST00000184007 104 ntBASIC23.31■■□□□ 1.32
Pcdhgb8A0A140LI48 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC23.29■■□□□ 1.32
Pcdhgb8A0A140LI48 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhgb8A0A140LI48 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhgb8A0A140LI48 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Pcdhgb8A0A140LI48 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhgb8A0A140LI48 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Pcdhgb8A0A140LI48 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhgb8A0A140LI48 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdhgb8A0A140LI48 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.18■■□□□ 1.3
Pcdhgb8A0A140LI48 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdhgb8A0A140LI48 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdhgb8A0A140LI48 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Pcdhgb8A0A140LI48 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdhgb8A0A140LI48 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.15■■□□□ 1.3
Pcdhgb8A0A140LI48 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdhgb8A0A140LI48 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdhgb8A0A140LI48 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdhgb8A0A140LI48 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms