Protein–RNA interactions for Protein: A0A075B606

Trav13d-1, T cell receptor alpha variable 13D-1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-1A0A075B606 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13d-1A0A075B606 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.11■□□□□ 0.81
Trav13d-1A0A075B606 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.09■□□□□ 0.81
Trav13d-1A0A075B606 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav13d-1A0A075B606 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.06■□□□□ 0.8
Trav13d-1A0A075B606 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-1A0A075B606 Gm8109-201ENSMUST00000194076 746 ntBASIC20.05■□□□□ 0.8
Trav13d-1A0A075B606 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20■□□□□ 0.79
Trav13d-1A0A075B606 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trav13d-1A0A075B606 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav13d-1A0A075B606 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav13d-1A0A075B606 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
Trav13d-1A0A075B606 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trav13d-1A0A075B606 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trav13d-1A0A075B606 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav13d-1A0A075B606 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trav13d-1A0A075B606 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav13d-1A0A075B606 Gm17082-201ENSMUST00000166043 1091 ntBASIC19.82■□□□□ 0.76
Trav13d-1A0A075B606 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav13d-1A0A075B606 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trav13d-1A0A075B606 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav13d-1A0A075B606 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC19.78■□□□□ 0.76
Trav13d-1A0A075B606 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trav13d-1A0A075B606 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav13d-1A0A075B606 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav13d-1A0A075B606 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Trav13d-1A0A075B606 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav13d-1A0A075B606 Gm27322-201ENSMUST00000184007 104 ntBASIC19.74■□□□□ 0.75
Trav13d-1A0A075B606 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC19.73■□□□□ 0.75
Trav13d-1A0A075B606 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Trav13d-1A0A075B606 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav13d-1A0A075B606 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav13d-1A0A075B606 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav13d-1A0A075B606 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trav13d-1A0A075B606 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav13d-1A0A075B606 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav13d-1A0A075B606 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav13d-1A0A075B606 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav13d-1A0A075B606 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Trav13d-1A0A075B606 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Trav13d-1A0A075B606 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav13d-1A0A075B606 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.53■□□□□ 0.72
Trav13d-1A0A075B606 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav13d-1A0A075B606 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav13d-1A0A075B606 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Trav13d-1A0A075B606 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav13d-1A0A075B606 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trav13d-1A0A075B606 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav13d-1A0A075B606 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
Trav13d-1A0A075B606 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.42■□□□□ 0.7
Trav13d-1A0A075B606 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav13d-1A0A075B606 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.4■□□□□ 0.7
Trav13d-1A0A075B606 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav13d-1A0A075B606 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav13d-1A0A075B606 Gm24804-201ENSMUST00000174982 85 ntBASIC19.39■□□□□ 0.69
Trav13d-1A0A075B606 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav13d-1A0A075B606 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav13d-1A0A075B606 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav13d-1A0A075B606 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.38■□□□□ 0.69
Trav13d-1A0A075B606 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trav13d-1A0A075B606 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav13d-1A0A075B606 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trav13d-1A0A075B606 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.35■□□□□ 0.69
Trav13d-1A0A075B606 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav13d-1A0A075B606 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav13d-1A0A075B606 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav13d-1A0A075B606 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav13d-1A0A075B606 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.3■□□□□ 0.68
Trav13d-1A0A075B606 Zfp131-207ENSMUST00000224946 1783 ntBASIC19.29■□□□□ 0.68
Trav13d-1A0A075B606 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav13d-1A0A075B606 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav13d-1A0A075B606 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trav13d-1A0A075B606 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav13d-1A0A075B606 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav13d-1A0A075B606 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trav13d-1A0A075B606 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav13d-1A0A075B606 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.17■□□□□ 0.66
Trav13d-1A0A075B606 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-1A0A075B606 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-1A0A075B606 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trav13d-1A0A075B606 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trav13d-1A0A075B606 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav13d-1A0A075B606 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trav13d-1A0A075B606 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trav13d-1A0A075B606 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-1A0A075B606 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Trav13d-1A0A075B606 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-1A0A075B606 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-1A0A075B606 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav13d-1A0A075B606 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav13d-1A0A075B606 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Trav13d-1A0A075B606 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav13d-1A0A075B606 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav13d-1A0A075B606 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trav13d-1A0A075B606 Mipep-204ENSMUST00000225043 1548 ntBASIC19■□□□□ 0.63
Trav13d-1A0A075B606 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav13d-1A0A075B606 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav13d-1A0A075B606 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav13d-1A0A075B606 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav13d-1A0A075B606 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms