Protein–RNA interactions for Protein: Q9Z0S7

Cldn9, Claudin-9, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn9Q9Z0S7 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Gm12366-201ENSMUST00000121722 873 ntBASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Gm5786-201ENSMUST00000085368 882 ntBASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cldn9Q9Z0S7 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cldn9Q9Z0S7 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cldn9Q9Z0S7 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cldn9Q9Z0S7 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Cldn9Q9Z0S7 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cldn9Q9Z0S7 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Cldn9Q9Z0S7 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.64■□□□□ 0.9
Cldn9Q9Z0S7 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.64■□□□□ 0.9
Cldn9Q9Z0S7 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cldn9Q9Z0S7 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cldn9Q9Z0S7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cldn9Q9Z0S7 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cldn9Q9Z0S7 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.64■□□□□ 0.89
Cldn9Q9Z0S7 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cldn9Q9Z0S7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cldn9Q9Z0S7 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.61■□□□□ 0.89
Cldn9Q9Z0S7 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cldn9Q9Z0S7 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Cldn9Q9Z0S7 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cldn9Q9Z0S7 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cldn9Q9Z0S7 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cldn9Q9Z0S7 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cldn9Q9Z0S7 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cldn9Q9Z0S7 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.56■□□□□ 0.88
Cldn9Q9Z0S7 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cldn9Q9Z0S7 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cldn9Q9Z0S7 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cldn9Q9Z0S7 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms