Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-3Q5R1E6 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-3Q5R1E6 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-3Q5R1E6 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-3Q5R1E6 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 AC167019.3-201ENSMUST00000228225 1266 ntBASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Pkd1-207ENSMUST00000228550 1050 ntBASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-3Q5R1E6 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav6-3Q5R1E6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Trav6-3Q5R1E6 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav6-3Q5R1E6 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav6-3Q5R1E6 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav6-3Q5R1E6 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Trav6-3Q5R1E6 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav6-3Q5R1E6 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC17.57■□□□□ 0.4
Trav6-3Q5R1E6 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav6-3Q5R1E6 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav6-3Q5R1E6 Gm9910-201ENSMUST00000195385 1550 ntBASIC17.57■□□□□ 0.4
Trav6-3Q5R1E6 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-3Q5R1E6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-3Q5R1E6 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-3Q5R1E6 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-3Q5R1E6 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.53■□□□□ 0.4
Trav6-3Q5R1E6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trav6-3Q5R1E6 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-3Q5R1E6 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav6-3Q5R1E6 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav6-3Q5R1E6 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trav6-3Q5R1E6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-3Q5R1E6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-3Q5R1E6 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-3Q5R1E6 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-3Q5R1E6 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-3Q5R1E6 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.49■□□□□ 0.39
Trav6-3Q5R1E6 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms