Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
Trav6-1A0A075B5Z8 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trav6-1A0A075B5Z8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 AC153911.1-201ENSMUST00000220378 758 ntBASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-1A0A075B5Z8 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6-1A0A075B5Z8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Gm9812-201ENSMUST00000061934 968 ntBASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Gm7199-201ENSMUST00000118327 1485 ntBASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trav6-1A0A075B5Z8 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav6-1A0A075B5Z8 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trav6-1A0A075B5Z8 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav6-1A0A075B5Z8 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav6-1A0A075B5Z8 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav6-1A0A075B5Z8 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC17.58■□□□□ 0.41
Trav6-1A0A075B5Z8 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trav6-1A0A075B5Z8 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Trav6-1A0A075B5Z8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC17.58■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm9939-201ENSMUST00000067161 1154 ntBASIC17.58■□□□□ 0.4
Trav6-1A0A075B5Z8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav6-1A0A075B5Z8 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 AC122317.2-201ENSMUST00000218708 1248 ntBASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm4799-201ENSMUST00000095396 657 ntBASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav6-1A0A075B5Z8 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm6821-201ENSMUST00000107540 542 ntBASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 AC115037.1-201ENSMUST00000223391 2173 ntBASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav6-1A0A075B5Z8 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.55■□□□□ 0.4
Trav6-1A0A075B5Z8 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-1A0A075B5Z8 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav6-1A0A075B5Z8 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav6-1A0A075B5Z8 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav6-1A0A075B5Z8 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav6-1A0A075B5Z8 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav6-1A0A075B5Z8 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav6-1A0A075B5Z8 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms