Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nkx3-2P97503 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nkx3-2P97503 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nkx3-2P97503 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nkx3-2P97503 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.76■□□□□ 0.91
Nkx3-2P97503 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Nkx3-2P97503 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nkx3-2P97503 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Nkx3-2P97503 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-2P97503 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-2P97503 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-2P97503 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.74■□□□□ 0.91
Nkx3-2P97503 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx3-2P97503 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nkx3-2P97503 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Nkx3-2P97503 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nkx3-2P97503 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx3-2P97503 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx3-2P97503 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx3-2P97503 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Nkx3-2P97503 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx3-2P97503 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nkx3-2P97503 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.68■□□□□ 0.9
Nkx3-2P97503 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Nkx3-2P97503 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Gm5812-201ENSMUST00000061073 957 ntBASIC20.67■□□□□ 0.9
Nkx3-2P97503 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-2P97503 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx3-2P97503 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nkx3-2P97503 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-2P97503 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx3-2P97503 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nkx3-2P97503 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx3-2P97503 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx3-2P97503 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Nkx3-2P97503 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-2P97503 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.62■□□□□ 0.89
Nkx3-2P97503 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-2P97503 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Nkx3-2P97503 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx3-2P97503 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms